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W. Richard McCombie
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20
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:
High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
Jonas A. Gustafson
,
Sophia B. Gibson
,
Nikhita Damaraju
,
Miranda P.G. Zalusky
,
Kendra Hoekzema
,
David Twesigomwe
,
Lei Yang
,
Anthony A. Snead
,
Phillip A. Richmond
,
Wouter De Coster
,
Nathan D. Olson
,
Andrea Guarracino
,
Qiuhui Li
,
Angela L. Miller
,
Joy Goffena
,
Zachary B. Anderson
,
Sophie H.R. Storz
,
Sydney A. Ward
,
Maisha Sinha
,
Claudia Gonzaga-Jauregui
,
Wayne E. Clarke
,
Anna O. Basile
,
André Corvelo
,
Catherine Reeves
,
Adrienne Helland
,
Rajeeva Lochan Musunuri
,
Mahler Revsine
,
Karynne E. Patterson
,
Cate R. Paschal
,
Christina Zakarian
,
Sara Goodwin
,
Tanner D. Jensen
,
Esther Robb
,
The 1000 Genomes ONT Sequencing Consortium
,
University of Washington Center for Rare Disease Research (UW-CRDR)
,
Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium
,
William Richard McCombie
,
Fritz J. Sedlazeck
,
Justin M. Zook
,
Stephen B. Montgomery
,
Erik Garrison
,
Mikhail Kolmogorov
,
Michael C. Schatz
,
Richard N. McLaughlin, Jr.
,
Harriet Dashnow
,
Michael C. Zody
,
Matt Loose
,
Miten Jain
,
Evan E. Eichler
,
and
Danny E. Miller
Genome Res.
November 2024
34
:
2061
-
2073
;
Published in Advance
October 2, 2024
,
doi:
10.1101/gr.279273.124
Abstract
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Method
:
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
Sergey Koren
,
Zhigui Bao
,
Andrea Guarracino
,
Shujun Ou
,
Sara Goodwin
,
Katharine M. Jenike
,
Julian Lucas
,
Brandy McNulty
,
Jimin Park
,
Mikko Rautiainen
,
Arang Rhie
,
Dick Roelofs
,
Harrie Schneiders
,
Ilse Vrijenhoek
,
Koen Nijbroek
,
Olle Nordesjo
,
Sergey Nurk
,
Mike Vella
,
Katherine R. Lawrence
,
Doreen Ware
,
Michael C. Schatz
,
Erik Garrison
,
Sanwen Huang
,
William Richard McCombie
,
Karen H. Miga
,
Alexander H.J. Wittenberg
,
and
Adam M. Phillippy
Genome Res.
November 2024
34
:
1919
-
1930
;
Published in Advance
November 6, 2024
,
doi:
10.1101/gr.279334.124
Abstract
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Review
:
Leveraging the power of long reads for targeted sequencing
Shruti V. Iyer
,
Sara Goodwin
,
and
William Richard McCombie
Genome Res.
November 2024
34
:
1701
-
1718
;
doi:
10.1101/gr.279168.124
Abstract
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Research
:
Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
Sergey Aganezov
,
Sara Goodwin
,
Rachel M. Sherman
,
Fritz J. Sedlazeck
,
Gayatri Arun
,
Sonam Bhatia
,
Isac Lee
,
Melanie Kirsche
,
Robert Wappel
,
Melissa Kramer
,
Karen Kostroff
,
David L. Spector
,
Winston Timp
,
W. Richard McCombie
,
and
Michael C. Schatz
Genome Res.
September 2020
30
:
1258
-
1273
;
Published in Advance
September 4, 2020
,
doi:
10.1101/gr.260497.119
Abstract
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Research
:
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
Maria Nattestad
,
Sara Goodwin
,
Karen Ng
,
Timour Baslan
,
Fritz J. Sedlazeck
,
Philipp Rescheneder
,
Tyler Garvin
,
Han Fang
,
James Gurtowski
,
Elizabeth Hutton
,
Elizabeth Tseng
,
Chen-Shan Chin
,
Timothy Beck
,
Yogi Sundaravadanam
,
Melissa Kramer
,
Eric Antoniou
,
John D. McPherson
,
James Hicks
,
W. Richard McCombie
,
and
Michael C. Schatz
Genome Res.
August 2018
28
:
1126
-
1135
;
Published in Advance
June 28, 2018
,
doi:
10.1101/gr.231100.117
Abstract
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:
A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing
Bo Wang
,
Michael Regulski
,
Elizabeth Tseng
,
Andrew Olson
,
Sara Goodwin
,
W. Richard McCombie
,
and
Doreen Ware
Genome Res.
June 2018
28
:
921
-
932
;
Published in Advance
April 30, 2018
,
doi:
10.1101/gr.227462.117
Abstract
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Method
:
Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
Sara Goodwin
,
James Gurtowski
,
Scott Ethe-Sayers
,
Panchajanya Deshpande
,
Michael C. Schatz
,
and
W. Richard McCombie
Genome Res.
November 2015
25
:
1750
-
1756
;
Published in Advance
October 7, 2015
,
doi:
10.1101/gr.191395.115
Abstract
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Research
:
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
Michael Regulski
,
Zhenyuan Lu
,
Jude Kendall
,
Mark T.A. Donoghue
,
Jon Reinders
,
Victor Llaca
,
Stephane Deschamps
,
Andrew Smith
,
Dan Levy
,
W. Richard McCombie
,
Scott Tingey
,
Antoni Rafalski
,
James Hicks
,
Doreen Ware
,
and
Robert A. Martienssen
Genome Res.
October 2013
23
:
1651
-
1662
;
Published in Advance
June 5, 2013
,
doi:
10.1101/gr.153510.112
Abstract
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Methods
:
High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
Emily Hodges
,
Andrew D. Smith
,
Jude Kendall
,
Zhenyu Xuan
,
Kandasamy Ravi
,
Michelle Rooks
,
Michael Q. Zhang
,
Kenny Ye
,
Arindam Bhattacharjee
,
Leonardo Brizuela
,
W. Richard McCombie
,
Michael Wigler
,
Gregory J. Hannon
,
and
James B. Hicks
Genome Res.
September 2009
19
:
1593
-
1605
;
Published in Advance
July 6, 2009
,
doi:
10.1101/gr.095190.109
Abstract
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Methods
:
Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing
Danielle V. Irvine
,
Derek B. Goto
,
Matthew W. Vaughn
,
Yukinobu Nakaseko
,
W. Richard McCombie
,
Mitsuhiro Yanagida
,
and
Rob Martienssen
Genome Res.
June 2009
19
:
1077
-
1083
;
Published in Advance
May 7, 2009
,
doi:
10.1101/gr.089318.108
Abstract
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