Searching journal content for W. Richard McCombie in author.

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  1. Resource: High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
    • Jonas A. Gustafson,
    • Sophia B. Gibson,
    • Nikhita Damaraju,
    • Miranda P.G. Zalusky,
    • Kendra Hoekzema,
    • David Twesigomwe,
    • Lei Yang,
    • Anthony A. Snead,
    • Phillip A. Richmond,
    • Wouter De Coster,
    • Nathan D. Olson,
    • Andrea Guarracino,
    • Qiuhui Li,
    • Angela L. Miller,
    • Joy Goffena,
    • Zachary B. Anderson,
    • Sophie H.R. Storz,
    • Sydney A. Ward,
    • Maisha Sinha,
    • Claudia Gonzaga-Jauregui,
    • Wayne E. Clarke,
    • Anna O. Basile,
    • André Corvelo,
    • Catherine Reeves,
    • Adrienne Helland,
    • Rajeeva Lochan Musunuri,
    • Mahler Revsine,
    • Karynne E. Patterson,
    • Cate R. Paschal,
    • Christina Zakarian,
    • Sara Goodwin,
    • Tanner D. Jensen,
    • Esther Robb,
    • The 1000 Genomes ONT Sequencing Consortium,
    • University of Washington Center for Rare Disease Research (UW-CRDR),
    • Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium,
    • William Richard McCombie,
    • Fritz J. Sedlazeck,
    • Justin M. Zook,
    • Stephen B. Montgomery,
    • Erik Garrison,
    • Mikhail Kolmogorov,
    • Michael C. Schatz,
    • Richard N. McLaughlin, Jr.,
    • Harriet Dashnow,
    • Michael C. Zody,
    • Matt Loose,
    • Miten Jain,
    • Evan E. Eichler,
    • and Danny E. Miller
    Genome Res. November 2024 34: 2061-2073; Published in Advance October 2, 2024, doi:10.1101/gr.279273.124
    OPEN ACCESS ARTICLE
  2. Method: Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
    • Sergey Koren,
    • Zhigui Bao,
    • Andrea Guarracino,
    • Shujun Ou,
    • Sara Goodwin,
    • Katharine M. Jenike,
    • Julian Lucas,
    • Brandy McNulty,
    • Jimin Park,
    • Mikko Rautiainen,
    • Arang Rhie,
    • Dick Roelofs,
    • Harrie Schneiders,
    • Ilse Vrijenhoek,
    • Koen Nijbroek,
    • Olle Nordesjo,
    • Sergey Nurk,
    • Mike Vella,
    • Katherine R. Lawrence,
    • Doreen Ware,
    • Michael C. Schatz,
    • Erik Garrison,
    • Sanwen Huang,
    • William Richard McCombie,
    • Karen H. Miga,
    • Alexander H.J. Wittenberg,
    • and Adam M. Phillippy
    Genome Res. November 2024 34: 1919-1930; Published in Advance November 6, 2024, doi:10.1101/gr.279334.124
  3. Review: Leveraging the power of long reads for targeted sequencing
    • Shruti V. Iyer,
    • Sara Goodwin,
    • and William Richard McCombie
    Genome Res. November 2024 34: 1701-1718; doi:10.1101/gr.279168.124
    OPEN ACCESS ARTICLE
  4. Research: Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing
    • Sergey Aganezov,
    • Sara Goodwin,
    • Rachel M. Sherman,
    • Fritz J. Sedlazeck,
    • Gayatri Arun,
    • Sonam Bhatia,
    • Isac Lee,
    • Melanie Kirsche,
    • Robert Wappel,
    • Melissa Kramer,
    • Karen Kostroff,
    • David L. Spector,
    • Winston Timp,
    • W. Richard McCombie,
    • and Michael C. Schatz
    Genome Res. September 2020 30: 1258-1273; Published in Advance September 4, 2020, doi:10.1101/gr.260497.119
  5. Research: Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
    • Maria Nattestad,
    • Sara Goodwin,
    • Karen Ng,
    • Timour Baslan,
    • Fritz J. Sedlazeck,
    • Philipp Rescheneder,
    • Tyler Garvin,
    • Han Fang,
    • James Gurtowski,
    • Elizabeth Hutton,
    • Elizabeth Tseng,
    • Chen-Shan Chin,
    • Timothy Beck,
    • Yogi Sundaravadanam,
    • Melissa Kramer,
    • Eric Antoniou,
    • John D. McPherson,
    • James Hicks,
    • W. Richard McCombie,
    • and Michael C. Schatz
    Genome Res. August 2018 28: 1126-1135; Published in Advance June 28, 2018, doi:10.1101/gr.231100.117
  6. Resource: A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing
    • Bo Wang,
    • Michael Regulski,
    • Elizabeth Tseng,
    • Andrew Olson,
    • Sara Goodwin,
    • W. Richard McCombie,
    • and Doreen Ware
    Genome Res. June 2018 28: 921-932; Published in Advance April 30, 2018, doi:10.1101/gr.227462.117
    OPEN ACCESS ARTICLE
  7. Method: Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome
    • Sara Goodwin,
    • James Gurtowski,
    • Scott Ethe-Sayers,
    • Panchajanya Deshpande,
    • Michael C. Schatz,
    • and W. Richard McCombie
    Genome Res. November 2015 25: 1750-1756; Published in Advance October 7, 2015, doi:10.1101/gr.191395.115
  8. Research: The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
    • Michael Regulski,
    • Zhenyuan Lu,
    • Jude Kendall,
    • Mark T.A. Donoghue,
    • Jon Reinders,
    • Victor Llaca,
    • Stephane Deschamps,
    • Andrew Smith,
    • Dan Levy,
    • W. Richard McCombie,
    • Scott Tingey,
    • Antoni Rafalski,
    • James Hicks,
    • Doreen Ware,
    • and Robert A. Martienssen
    Genome Res. October 2013 23: 1651-1662; Published in Advance June 5, 2013, doi:10.1101/gr.153510.112
    OPEN ACCESS ARTICLE
  9. Methods: High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
    • Emily Hodges,
    • Andrew D. Smith,
    • Jude Kendall,
    • Zhenyu Xuan,
    • Kandasamy Ravi,
    • Michelle Rooks,
    • Michael Q. Zhang,
    • Kenny Ye,
    • Arindam Bhattacharjee,
    • Leonardo Brizuela,
    • W. Richard McCombie,
    • Michael Wigler,
    • Gregory J. Hannon,
    • and James B. Hicks
    Genome Res. September 2009 19: 1593-1605; Published in Advance July 6, 2009, doi:10.1101/gr.095190.109
    OPEN ACCESS ARTICLE
  10. Methods: Mapping epigenetic mutations in fission yeast using whole-genome next-generation sequencing
    • Danielle V. Irvine,
    • Derek B. Goto,
    • Matthew W. Vaughn,
    • Yukinobu Nakaseko,
    • W. Richard McCombie,
    • Mitsuhiro Yanagida,
    • and Rob Martienssen
    Genome Res. June 2009 19: 1077-1083; Published in Advance May 7, 2009, doi:10.1101/gr.089318.108
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