Searching journal content for Vishwanath R. Iyer in author.

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  1. Research: MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network
    • Haridha Shivram,
    • Steven V. Le,
    • and Vishwanath R. Iyer
    Genome Res. February 2019 29: 184-192; Published in Advance January 16, 2019, doi:10.1101/gr.238311.118
  2. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  3. Research: Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
    • Bum-Kyu Lee,
    • Akshay A. Bhinge,
    • Anna Battenhouse,
    • Ryan M. McDaniell,
    • Zheng Liu,
    • Lingyun Song,
    • Yunyun Ni,
    • Ewan Birney,
    • Jason D. Lieb,
    • Terrence S. Furey,
    • Gregory E. Crawford,
    • and Vishwanath R. Iyer
    Genome Res. January 2012 22: 9-24; Published in Advance November 16, 2011, doi:10.1101/gr.127597.111
    OPEN ACCESS ARTICLE
  4. Resource: Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • Lingyun Song,
    • Zhancheng Zhang,
    • Linda L. Grasfeder,
    • Alan P. Boyle,
    • Paul G. Giresi,
    • Bum-Kyu Lee,
    • Nathan C. Sheffield,
    • Stefan Gräf,
    • Mikael Huss,
    • Damian Keefe,
    • Zheng Liu,
    • Darin London,
    • Ryan M. McDaniell,
    • Yoichiro Shibata,
    • Kimberly A. Showers,
    • Jeremy M. Simon,
    • Teresa Vales,
    • Tianyuan Wang,
    • Deborah Winter,
    • Zhuzhu Zhang,
    • Neil D. Clarke,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • Jason D. Lieb,
    • and Terrence S. Furey
    Genome Res. October 2011 21: 1757-1767; Published in Advance July 12, 2011, doi:10.1101/gr.121541.111
    OPEN ACCESS ARTICLE
  5. Method: High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
    • Alan P. Boyle,
    • Lingyun Song,
    • Bum-Kyu Lee,
    • Darin London,
    • Damian Keefe,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • and Terrence S. Furey
    Genome Res. March 2011 21: 456-464; Published in Advance November 24, 2010, doi:10.1101/gr.112656.110
    OPEN ACCESS ARTICLE
  6. Methods: Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE)
    • Akshay A. Bhinge,
    • Jonghwan Kim,
    • Ghia M. Euskirchen,
    • Michael Snyder,
    • and Vishwanath R. Iyer
    Genome Res. June 2007 17: 910-916; doi:10.1101/gr.5574907
    OPEN ACCESS ARTICLE
  7. Methods: FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
    • Paul G. Giresi,
    • Jonghwan Kim,
    • Ryan M. McDaniell,
    • Vishwanath R. Iyer,
    • and Jason D. Lieb
    Genome Res. June 2007 17: 877-885; Published in Advance December 19, 2006, doi:10.1101/gr.5533506
    OPEN ACCESS ARTICLE
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