Searching journal content for Vineet Bafna in author.

Displaying results 1-10 of 14
For checked items
  1. Method: OMKar automates genome karyotyping using optical maps to identify constitutional abnormalities
    • Siavash Raeisi Dehkordi,
    • Zhaoyang Jia,
    • Joey Estabrook,
    • Jen Hauenstein,
    • Neil Miller,
    • Naz Güleray-Lafci,
    • Jürgen Neesen,
    • Alex Hastie,
    • Alka Chaubey,
    • Andy Wing Chun Pang,
    • Paul Dremsek,
    • and Vineet Bafna
    Genome Res. December 2025 35: 2671-2681; Published in Advance November 14, 2025, doi:10.1101/gr.280536.125
    OPEN ACCESS ARTICLE
  2. Method: CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing
    • Kaiyuan Zhu,
    • Matthew G. Jones,
    • Jens Luebeck,
    • Xinxin Bu,
    • Hyerim Yi,
    • King L. Hung,
    • Ivy Tsz-Lo Wong,
    • Shu Zhang,
    • Paul S. Mischel,
    • Howard Y. Chang,
    • and Vineet Bafna
    Genome Res. September 2024 34: 1344-1354; Published in Advance July 9, 2024, doi:10.1101/gr.279131.124
    OPEN ACCESS ARTICLE
  3. Method: Targeted genotyping of variable number tandem repeats with adVNTR
    • Mehrdad Bakhtiari,
    • Sharona Shleizer-Burko,
    • Melissa Gymrek,
    • Vikas Bansal,
    • and Vineet Bafna
    Genome Res. November 2018 28: 1709-1719; Published in Advance October 23, 2018, doi:10.1101/gr.235119.118
  4. Method: HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
    • Peter Edge,
    • Vineet Bafna,
    • and Vikas Bansal
    Genome Res. May 2017 27: 801-812; Published in Advance December 9, 2016, doi:10.1101/gr.213462.116
  5. Method: Amplification and thrifty single-molecule sequencing of recurrent somatic structural variations
    • Anand Patel,
    • Richard Schwab,
    • Yu-Tsueng Liu,
    • and Vineet Bafna
    Genome Res. February 2014 24: 318-328; Published in Advance December 4, 2013, doi:10.1101/gr.161497.113
  6. Research: Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
    • Gary C. Hon,
    • R. David Hawkins,
    • Otavia L. Caballero,
    • Christine Lo,
    • Ryan Lister,
    • Mattia Pelizzola,
    • Armand Valsesia,
    • Zhen Ye,
    • Samantha Kuan,
    • Lee E. Edsall,
    • Anamaria Aranha Camargo,
    • Brian J. Stevenson,
    • Joseph R. Ecker,
    • Vineet Bafna,
    • Robert L. Strausberg,
    • Andrew J. Simpson,
    • and Bing Ren
    Genome Res. February 2012 22: 246-258; Published in Advance December 7, 2011, doi:10.1101/gr.125872.111
  7. Methods: Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    • Kevin Judd McKernan,
    • Heather E. Peckham,
    • Gina L. Costa,
    • Stephen F. McLaughlin,
    • Yutao Fu,
    • Eric F. Tsung,
    • Christopher R. Clouser,
    • Cisyla Duncan,
    • Jeffrey K. Ichikawa,
    • Clarence C. Lee,
    • Zheng Zhang,
    • Swati S. Ranade,
    • Eileen T. Dimalanta,
    • Fiona C. Hyland,
    • Tanya D. Sokolsky,
    • Lei Zhang,
    • Andrew Sheridan,
    • Haoning Fu,
    • Cynthia L. Hendrickson,
    • Bin Li,
    • Lev Kotler,
    • Jeremy R. Stuart,
    • Joel A. Malek,
    • Jonathan M. Manning,
    • Alena A. Antipova,
    • Damon S. Perez,
    • Michael P. Moore,
    • Kathleen C. Hayashibara,
    • Michael R. Lyons,
    • Robert E. Beaudoin,
    • Brittany E. Coleman,
    • Michael W. Laptewicz,
    • Adam E. Sannicandro,
    • Michael D. Rhodes,
    • Rajesh K. Gottimukkala,
    • Shan Yang,
    • Vineet Bafna,
    • Ali Bashir,
    • Andrew MacBride,
    • Can Alkan,
    • Jeffrey M. Kidd,
    • Evan E. Eichler,
    • Martin G. Reese,
    • Francisco M. De La Vega,
    • and Alan P. Blanchard
    Genome Res. September 2009 19: 1527-1541; Published in Advance June 22, 2009, doi:10.1101/gr.091868.109
    OPEN ACCESS ARTICLE
  8. Methods: An MCMC algorithm for haplotype assembly from whole-genome sequence data
    • Vikas Bansal,
    • Aaron L. Halpern,
    • Nelson Axelrod,
    • and Vineet Bafna
    Genome Res. August 2008 18: 1336-1346; doi:10.1101/gr.077065.108
  9. Methods: Comparative proteogenomics: Combining mass spectrometry and comparative genomics to analyze multiple genomes
    • Nitin Gupta,
    • Jamal Benhamida,
    • Vipul Bhargava,
    • Daniel Goodman,
    • Elisabeth Kain,
    • Ian Kerman,
    • Ngan Nguyen,
    • Noah Ollikainen,
    • Jesse Rodriguez,
    • Jian Wang,
    • Mary S. Lipton,
    • Margaret Romine,
    • Vineet Bafna,
    • Richard D. Smith,
    • and Pavel A. Pevzner
    Genome Res. July 2008 18: 1133-1142; Published in Advance April 21, 2008, doi:10.1101/gr.074344.107
  10. Methods: Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
    • Nitin Gupta,
    • Stephen Tanner,
    • Navdeep Jaitly,
    • Joshua N. Adkins,
    • Mary Lipton,
    • Robert Edwards,
    • Margaret Romine,
    • Andrei Osterman,
    • Vineet Bafna,
    • Richard D. Smith,
    • and Pavel A. Pevzner
    Genome Res. September 2007 17: 1362-1377; Published in Advance August 9, 2007, doi:10.1101/gr.6427907
For checked items

Search Results

Next 4 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research