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Uwe Ohler
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Displaying results 1-9 of
9
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Method
:
Deep neural networks for interpreting RNA-binding protein target preferences
Mahsa Ghanbari
and
Uwe Ohler
Genome Res.
February 2020
30
:
214
-
226
;
Published in Advance
January 28, 2020
,
doi:
10.1101/gr.247494.118
Abstract
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Research
:
DDX54 regulates transcriptome dynamics during DNA damage response
Miha Milek
,
Koshi Imami
,
Neelanjan Mukherjee
,
Francesca De Bortoli
,
Ulrike Zinnall
,
Orsalia Hazapis
,
Christian Trahan
,
Marlene Oeffinger
,
Florian Heyd
,
Uwe Ohler
,
Matthias Selbach
,
and
Markus Landthaler
Genome Res.
August 2017
27
:
1344
-
1359
;
Published in Advance
June 8, 2017
,
doi:
10.1101/gr.218438.116
Abstract
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Resource
:
The mRNA-bound proteome of the early fly embryo
Hans-Hermann Wessels
,
Koshi Imami
,
Alexander G. Baltz
,
Marcin Kolinski
,
Anastasia Beldovskaya
,
Matthias Selbach
,
Stephen Small
,
Uwe Ohler
,
and
Markus Landthaler
Genome Res.
July 2016
26
:
1000
-
1009
;
Published in Advance
April 28, 2016
,
doi:
10.1101/gr.200386.115
Abstract
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Method
:
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data
Song Li
,
Louisa M. Liberman
,
Neelanjan Mukherjee
,
Philip N. Benfey
,
and
Uwe Ohler
Genome Res.
October 2013
23
:
1730
-
1739
;
Published in Advance
July 1, 2013
,
doi:
10.1101/gr.149310.112
Abstract
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Method
:
Predicting cell-type–specific gene expression from regions of open chromatin
Anirudh Natarajan
,
Galip Gürkan Yardımcı
,
Nathan C. Sheffield
,
Gregory E. Crawford
,
and
Uwe Ohler
Genome Res.
September 2012
22
:
1711
-
1722
;
doi:
10.1101/gr.135129.111
Abstract
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Resource
:
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in
Arabidopsis
Natalie W. Breakfield
,
David L. Corcoran
,
Jalean J. Petricka
,
Jeffrey Shen
,
Juthamas Sae-Seaw
,
Ignacio Rubio-Somoza
,
Detlef Weigel
,
Uwe Ohler
,
and
Philip N. Benfey
Genome Res.
January 2012
22
:
163
-
176
;
Published in Advance
September 22, 2011
,
doi:
10.1101/gr.123547.111
Abstract
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Methods
:
A transcription factor affinity-based code for mammalian transcription initiation
Molly Megraw
,
Fernando Pereira
,
Shane T. Jensen
,
Uwe Ohler
,
and
Artemis G. Hatzigeorgiou
Genome Res.
April 2009
19
:
644
-
656
;
Published in Advance
January 13, 2009
,
doi:
10.1101/gr.085449.108
Abstract
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METHODS
:
Promoter Prediction on a Genomic Scale—The
Adh
Experience
Uwe Ohler
Genome Res.
April 1, 2000
10
:
539
-
542
;
doi:
10.1101/gr.10.4.539
Abstract
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LETTER
:
Genome Annotation Assessment in
Drosophila melanogaster
Martin G. Reese
,
George Hartzell
,
Nomi L. Harris
,
Uwe Ohler
,
Josep F. Abril
,
and
Suzanna E. Lewis
Genome Res.
April 1, 2000
10
:
483
-
501
;
doi:
10.1101/gr.10.4.483
Abstract
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