Searching journal content for Ting Wang in author.

Displaying results 1-10 of 18
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  1. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  2. Resource: Charting the regulatory landscape of TP53 on transposable elements in cancer
    • Xuan Qu,
    • Yonghao Liang,
    • Colin McCornack,
    • Xiaoyun Xing,
    • Heather Schmidt,
    • Chad Tomlinson,
    • Catrina Fronick,
    • Edward A. Belter, Jr.,
    • Juan F. Macias-Velasco,
    • and Ting Wang
    Genome Res. June 2025 35: 1456-1471; Published in Advance May 13, 2025, doi:10.1101/gr.279398.124
    OPEN ACCESS ARTICLE
  3. Resource: Exploring the epigenome profiles of repetitive elements with the WashU Repeat Browser
    • Jiawei Shen,
    • Siyuan Cheng,
    • Deepak Purushotham,
    • Xiaoyu Zhuo,
    • Alan Y Du,
    • Wenjin Zhang,
    • Daofeng Li,
    • and Ting Wang
    Genome Res. February 21, 2025 gr.279764.124; Published in Advance February 21, 2025, doi:10.1101/gr.279764.124
    OPEN ACCESS ARTICLEACCEPTED MANUSCRIPT
  4. Resource: Common and specific gene regulatory programs in zebrafish caudal fin regeneration at single-cell resolution
    • Yujie Chen,
    • Yiran Hou,
    • Qinglin Zeng,
    • Irene Wang,
    • Meiru Shang,
    • Kwangdeok Shin,
    • Christopher Hemauer,
    • Xiaoyun Xing,
    • Junsu Kang,
    • Guoyan Zhao,
    • and Ting Wang
    Genome Res. January 2025 35: 202-218; Published in Advance January 14, 2025, doi:10.1101/gr.279372.124
    OPEN ACCESS ARTICLE
  5. Method: Using long-read CAGE sequencing to profile cryptic-promoter-derived transcripts and their contribution to the immunopeptidome
    • Ju Heon Maeng,
    • H. Josh Jang,
    • Alan Y. Du,
    • Shin-Cheng Tzeng,
    • and Ting Wang
    Genome Res. December 2023 33: 2143-2155; Published in Advance December 8, 2023, doi:10.1101/gr.277061.122
    OPEN ACCESS ARTICLE
  6. Resource: Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser
    • Xiaoyu Zhuo,
    • Silas Hsu,
    • Deepak Purushotham,
    • Prashant Kumar Kuntala,
    • Jessica K. Harrison,
    • Alan Y. Du,
    • Samuel Chen,
    • Daofeng Li,
    • and Ting Wang
    Genome Res. May 2023 33: 824-835; Published in Advance May 8, 2023, doi:10.1101/gr.277550.122
    OPEN ACCESS ARTICLE
  7. Research: Gaps and complex structurally variant loci in phased genome assemblies
    • David Porubsky,
    • Mitchell R. Vollger,
    • William T. Harvey,
    • Allison N. Rozanski,
    • Peter Ebert,
    • Glenn Hickey,
    • Patrick Hasenfeld,
    • Ashley D. Sanders,
    • Catherine Stober,
    • Human Pangenome Reference Consortium,
    • Jan O. Korbel,
    • Benedict Paten,
    • Tobias Marschall,
    • and Evan E. Eichler
    Genome Res. April 2023 33: 496-510; Published in Advance May 10, 2023, doi:10.1101/gr.277334.122
    OPEN ACCESS ARTICLE
  8. Research: Functional characterization of enhancer activity during a long terminal repeat's evolution
    • Alan Y. Du,
    • Xiaoyu Zhuo,
    • Vasavi Sundaram,
    • Nicholas O. Jensen,
    • Hemangi G. Chaudhari,
    • Nancy L. Saccone,
    • Barak A. Cohen,
    • and Ting Wang
    Genome Res. October 2022 32: 1840-1851; Published in Advance October 3, 2022, doi:10.1101/gr.276863.122
    OPEN ACCESS ARTICLE
  9. Resource: Epigenomic analysis reveals prevalent contribution of transposable elements to cis-regulatory elements, tissue-specific expression, and alternative promoters in zebrafish
    • Hyung Joo Lee,
    • Yiran Hou,
    • Ju Heon Maeng,
    • Nakul M. Shah,
    • Yujie Chen,
    • Heather A. Lawson,
    • Hongbo Yang,
    • Feng Yue,
    • and Ting Wang
    Genome Res. July 2022 32: 1424-1436; Published in Advance June 1, 2022, doi:10.1101/gr.276052.121
    OPEN ACCESS ARTICLE
  10. Method: Epigenomic differences in the human and chimpanzee genomes are associated with structural variation
    • Xiaoyu Zhuo,
    • Alan Y. Du,
    • Erica C. Pehrsson,
    • Daofeng Li,
    • and Ting Wang
    Genome Res. February 2021 31: 279-290; Published in Advance December 10, 2020, doi:10.1101/gr.263491.120
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