Searching journal content for Tina A. Graves in author.

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  1. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  2. Research: Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages
    • Jennifer F. Hughes,
    • Helen Skaletsky,
    • Tatyana Pyntikova,
    • Natalia Koutseva,
    • Terje Raudsepp,
    • Laura G. Brown,
    • Daniel W. Bellott,
    • Ting-Jan Cho,
    • Shannon Dugan-Rocha,
    • Ziad Khan,
    • Colin Kremitzki,
    • Catrina Fronick,
    • Tina A. Graves-Lindsay,
    • Lucinda Fulton,
    • Wesley C. Warren,
    • Richard K. Wilson,
    • Elaine Owens,
    • James E. Womack,
    • William J. Murphy,
    • Donna M. Muzny,
    • Kim C. Worley,
    • Bhanu P. Chowdhary,
    • Richard A. Gibbs,
    • and David C. Page
    Genome Res. December 2020 30: 1716-1726; Published in Advance November 18, 2020, doi:10.1101/gr.269902.120
  3. Corrigendum: Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data
    • John Huddleston,
    • Mark J.P. Chaisson,
    • Karyn Meltz Steinberg,
    • Wes Warren,
    • Kendra Hoekzema,
    • David Gordon,
    • Tina A. Graves-Lindsay,
    • Katherine M. Munson,
    • Zev N. Kronenberg,
    • Laura Vives,
    • Paul Peluso,
    • Matthew Boitano,
    • Chen-Shin Chin,
    • Jonas Korlach,
    • Richard K. Wilson,
    • and Evan E. Eichler
    Genome Res. January 2018 28: 144; doi:10.1101/gr.233007.117
    OPEN ACCESS ARTICLE
  4. Corrigendum: Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2
    • Mario Ventura,
    • Claudia R. Catacchio,
    • Saba Sajjadian,
    • Laura Vives,
    • Peter H. Sudmant,
    • Tomas Marques-Bonet,
    • Tina A. Graves,
    • Richard K. Wilson,
    • and Evan E. Eichler
    Genome Res. September 2017 27: 1621.1; doi:10.1101/gr.226878.117
    OPEN ACCESS ARTICLE
  5. Research: Discovery and genotyping of structural variation from long-read haploid genome sequence data
    • John Huddleston,
    • Mark J.P. Chaisson,
    • Karyn Meltz Steinberg,
    • Wes Warren,
    • Kendra Hoekzema,
    • David Gordon,
    • Tina A. Graves-Lindsay,
    • Katherine M. Munson,
    • Zev N. Kronenberg,
    • Laura Vives,
    • Paul Peluso,
    • Matthew Boitano,
    • Chen-Shin Chin,
    • Jonas Korlach,
    • Richard K. Wilson,
    • and Evan E. Eichler
    Genome Res. May 2017 27: 677-685; Published in Advance November 28, 2016, doi:10.1101/gr.214007.116
  6. Resource: Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
    • Valerie A. Schneider,
    • Tina Graves-Lindsay,
    • Kerstin Howe,
    • Nathan Bouk,
    • Hsiu-Chuan Chen,
    • Paul A. Kitts,
    • Terence D. Murphy,
    • Kim D. Pruitt,
    • Françoise Thibaud-Nissen,
    • Derek Albracht,
    • Robert S. Fulton,
    • Milinn Kremitzki,
    • Vincent Magrini,
    • Chris Markovic,
    • Sean McGrath,
    • Karyn Meltz Steinberg,
    • Kate Auger,
    • William Chow,
    • Joanna Collins,
    • Glenn Harden,
    • Timothy Hubbard,
    • Sarah Pelan,
    • Jared T. Simpson,
    • Glen Threadgold,
    • James Torrance,
    • Jonathan M. Wood,
    • Laura Clarke,
    • Sergey Koren,
    • Matthew Boitano,
    • Paul Peluso,
    • Heng Li,
    • Chen-Shan Chin,
    • Adam M. Phillippy,
    • Richard Durbin,
    • Richard K. Wilson,
    • Paul Flicek,
    • Evan E. Eichler,
    • and Deanna M. Church
    Genome Res. May 2017 27: 849-864; Published in Advance April 10, 2017, doi:10.1101/gr.213611.116
    OPEN ACCESS ARTICLE
  7. Research: Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region
    • Kiana Mohajeri,
    • Stuart Cantsilieris,
    • John Huddleston,
    • Bradley J. Nelson,
    • Bradley P. Coe,
    • Catarina D. Campbell,
    • Carl Baker,
    • Lana Harshman,
    • Katherine M. Munson,
    • Zev N. Kronenberg,
    • Milinn Kremitzki,
    • Archana Raja,
    • Claudia Rita Catacchio,
    • Tina A. Graves,
    • Richard K. Wilson,
    • Mario Ventura,
    • and Evan E. Eichler
    Genome Res. November 2016 26: 1453-1467; Published in Advance October 7, 2016, doi:10.1101/gr.211284.116
  8. Resource: The genome of the vervet (Chlorocebus aethiops sabaeus)
    • Wesley C. Warren,
    • Anna J. Jasinska,
    • Raquel García-Pérez,
    • Hannes Svardal,
    • Chad Tomlinson,
    • Mariano Rocchi,
    • Nicoletta Archidiacono,
    • Oronzo Capozzi,
    • Patrick Minx,
    • Michael J. Montague,
    • Kim Kyung,
    • LaDeana W. Hillier,
    • Milinn Kremitzki,
    • Tina Graves,
    • Colby Chiang,
    • Jennifer Hughes,
    • Nam Tran,
    • Yu Huang,
    • Vasily Ramensky,
    • Oi-wa Choi,
    • Yoon J. Jung,
    • Christopher A. Schmitt,
    • Nikoleta Juretic,
    • Jessica Wasserscheid,
    • Trudy R. Turner,
    • Roger W. Wiseman,
    • Jennifer J. Tuscher,
    • Julie A. Karl,
    • Jörn E. Schmitz,
    • Roland Zahn,
    • David H. O'Connor,
    • Eugene Redmond,
    • Alex Nisbett,
    • Béatrice Jacquelin,
    • Michaela C. Müller-Trutwin,
    • Jason M. Brenchley,
    • Michel Dione,
    • Martin Antonio,
    • Gary P. Schroth,
    • Jay R. Kaplan,
    • Matthew J. Jorgensen,
    • Gregg W.C. Thomas,
    • Matthew W. Hahn,
    • Brian J. Raney,
    • Bronwen Aken,
    • Rishi Nag,
    • Juergen Schmitz,
    • Gennady Churakov,
    • Angela Noll,
    • Roscoe Stanyon,
    • David Webb,
    • Francoise Thibaud-Nissen,
    • Magnus Nordborg,
    • Tomas Marques-Bonet,
    • Ken Dewar,
    • George M. Weinstock,
    • Richard K. Wilson,
    • and Nelson B. Freimer
    Genome Res. December 2015 25: 1921-1933; Published in Advance September 16, 2015, doi:10.1101/gr.192922.115
  9. Resource: Single haplotype assembly of the human genome from a hydatidiform mole
    • Karyn Meltz Steinberg,
    • Valerie A. Schneider,
    • Tina A. Graves-Lindsay,
    • Robert S. Fulton,
    • Richa Agarwala,
    • John Huddleston,
    • Sergey A. Shiryev,
    • Aleksandr Morgulis,
    • Urvashi Surti,
    • Wesley C. Warren,
    • Deanna M. Church,
    • Evan E. Eichler,
    • and Richard K. Wilson
    Genome Res. December 2014 24: 2066-2076; Published in Advance November 4, 2014, doi:10.1101/gr.180893.114
  10. Resource: Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline
    • Nicholas Stong,
    • Zhong Deng,
    • Ravi Gupta,
    • Sufen Hu,
    • Shiela Paul,
    • Amber K. Weiner,
    • Evan E. Eichler,
    • Tina Graves,
    • Catrina C. Fronick,
    • Laura Courtney,
    • Richard K. Wilson,
    • Paul M. Lieberman,
    • Ramana V. Davuluri,
    • and Harold Riethman
    Genome Res. June 2014 24: 1039-1050; Published in Advance March 27, 2014, doi:10.1101/gr.166983.113
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