Searching journal content for Timothy E. Reddy in author.

Displaying results 1-10 of 13
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  1. Method: Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data
    • Kaixuan Luo,
    • Jianling Zhong,
    • Alexias Safi,
    • Linda K. Hong,
    • Alok K. Tewari,
    • Lingyun Song,
    • Timothy E. Reddy,
    • Li Ma,
    • Gregory E. Crawford,
    • and Alexander J. Hartemink
    Genome Res. June 2022 32: 1183-1198; Published in Advance May 24, 2022, doi:10.1101/gr.272203.120
  2. Method: Correcting signal biases and detecting regulatory elements in STARR-seq data
    • Young-Sook Kim,
    • Graham D. Johnson,
    • Jungkyun Seo,
    • Alejandro Barrera,
    • Thomas N. Cowart,
    • William H. Majoros,
    • Alejandro Ochoa,
    • Andrew S. Allen,
    • and Timothy E. Reddy
    Genome Res. May 2021 31: 877-889; Published in Advance March 15, 2021, doi:10.1101/gr.269209.120
    OPEN ACCESS ARTICLE
  3. Research: AP-1 subunits converge promiscuously at enhancers to potentiate transcription
    • Jungkyun Seo,
    • D. Dewran Koçak,
    • Luke C. Bartelt,
    • Courtney A. Williams,
    • Alejandro Barrera,
    • Charles A. Gersbach,
    • and Timothy E. Reddy
    Genome Res. April 2021 31: 538-550; Published in Advance March 5, 2021, doi:10.1101/gr.267898.120
    OPEN ACCESS ARTICLE
  4. Research: Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding
    • Ian C. McDowell,
    • Alejandro Barrera,
    • Anthony M. D'Ippolito,
    • Christopher M. Vockley,
    • Linda K. Hong,
    • Sarah M. Leichter,
    • Luke C. Bartelt,
    • William H. Majoros,
    • Lingyun Song,
    • Alexias Safi,
    • D. Dewran Koçak,
    • Charles A. Gersbach,
    • Alexander J. Hartemink,
    • Gregory E. Crawford,
    • Barbara E. Engelhardt,
    • and Timothy E. Reddy
    Genome Res. September 2018 28: 1272-1284; Published in Advance August 10, 2018, doi:10.1101/gr.233346.117
    OPEN ACCESS ARTICLE
  5. Perspective: Genomic approaches for understanding the genetics of complex disease
    • William L. Lowe, Jr. and
    • Timothy E. Reddy
    Genome Res. October 2015 25: 1432-1441; doi:10.1101/gr.190603.115
    OPEN ACCESS ARTICLE
  6. Research: Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators
    • Lauren R. Polstein,
    • Pablo Perez-Pinera,
    • D. Dewran Kocak,
    • Christopher M. Vockley,
    • Peggy Bledsoe,
    • Lingyun Song,
    • Alexias Safi,
    • Gregory E. Crawford,
    • Timothy E. Reddy,
    • and Charles A. Gersbach
    Genome Res. August 2015 25: 1158-1169; Published in Advance May 29, 2015, doi:10.1101/gr.179044.114
  7. Method: Massively parallel quantification of the regulatory effects of noncoding genetic variation in a human cohort
    • Christopher M. Vockley,
    • Cong Guo,
    • William H. Majoros,
    • Michael Nodzenski,
    • Denise M. Scholtens,
    • M. Geoffrey Hayes,
    • William L. Lowe, Jr.,
    • and Timothy E. Reddy
    Genome Res. August 2015 25: 1206-1214; Published in Advance June 17, 2015, doi:10.1101/gr.190090.115
  8. Resource: Dynamic DNA methylation across diverse human cell lines and tissues
    • Katherine E. Varley,
    • Jason Gertz,
    • Kevin M. Bowling,
    • Stephanie L. Parker,
    • Timothy E. Reddy,
    • Florencia Pauli-Behn,
    • Marie K. Cross,
    • Brian A. Williams,
    • John A. Stamatoyannopoulos,
    • Gregory E. Crawford,
    • Devin M. Absher,
    • Barbara J. Wold,
    • and Richard M. Myers
    Genome Res. March 2013 23: 555-567; Published in Advance January 16, 2013, doi:10.1101/gr.147942.112
  9. Research: Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
    • Jason Gertz,
    • Timothy E. Reddy,
    • Katherine E. Varley,
    • Michael J. Garabedian,
    • and Richard M. Myers
    Genome Res. November 2012 22: 2153-2162; Published in Advance September 26, 2012, doi:10.1101/gr.135681.111
  10. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
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