Searching journal content for Thomas Keane in author.

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  1. Method: Chromosome assembly of large and complex genomes using multiple references
    • Mikhail Kolmogorov,
    • Joel Armstrong,
    • Brian J. Raney,
    • Ian Streeter,
    • Matthew Dunn,
    • Fengtang Yang,
    • Duncan Odom,
    • Paul Flicek,
    • Thomas M. Keane,
    • David Thybert,
    • Benedict Paten,
    • and Son Pham
    Genome Res. November 2018 28: 1720-1732; Published in Advance October 19, 2018, doi:10.1101/gr.236273.118
    OPEN ACCESS ARTICLE
  2. Method: Comparative Annotation Toolkit (CAT)—simultaneous clade and personal genome annotation
    • Ian T. Fiddes,
    • Joel Armstrong,
    • Mark Diekhans,
    • Stefanie Nachtweide,
    • Zev N. Kronenberg,
    • Jason G. Underwood,
    • David Gordon,
    • Dent Earl,
    • Thomas Keane,
    • Evan E. Eichler,
    • David Haussler,
    • Mario Stanke,
    • and Benedict Paten
    Genome Res. July 2018 28: 1029-1038; Published in Advance June 8, 2018, doi:10.1101/gr.233460.117
  3. Research: Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
    • David Thybert,
    • Maša Roller,
    • Fábio C.P. Navarro,
    • Ian Fiddes,
    • Ian Streeter,
    • Christine Feig,
    • David Martin-Galvez,
    • Mikhail Kolmogorov,
    • Václav Janoušek,
    • Wasiu Akanni,
    • Bronwen Aken,
    • Sarah Aldridge,
    • Varshith Chakrapani,
    • William Chow,
    • Laura Clarke,
    • Carla Cummins,
    • Anthony Doran,
    • Matthew Dunn,
    • Leo Goodstadt,
    • Kerstin Howe,
    • Matthew Howell,
    • Ambre-Aurore Josselin,
    • Robert C. Karn,
    • Christina M. Laukaitis,
    • Lilue Jingtao,
    • Fergal Martin,
    • Matthieu Muffato,
    • Stefanie Nachtweide,
    • Michael A. Quail,
    • Cristina Sisu,
    • Mario Stanke,
    • Klara Stefflova,
    • Cock Van Oosterhout,
    • Frederic Veyrunes,
    • Ben Ward,
    • Fengtang Yang,
    • Golbahar Yazdanifar,
    • Amonida Zadissa,
    • David J. Adams,
    • Alvis Brazma,
    • Mark Gerstein,
    • Benedict Paten,
    • Son Pham,
    • Thomas M. Keane,
    • Duncan T. Odom,
    • and Paul Flicek
    Genome Res. April 2018 28: 448-459; Published in Advance March 21, 2018, doi:10.1101/gr.234096.117
    OPEN ACCESS ARTICLE
  4. Method: Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes
    • Dirk D. Dolle,
    • Zhicheng Liu,
    • Matthew Cotten,
    • Jared T. Simpson,
    • Zamin Iqbal,
    • Richard Durbin,
    • Shane A. McCarthy,
    • and Thomas M. Keane
    Genome Res. February 2017 27: 300-309; Published in Advance December 16, 2016, doi:10.1101/gr.211748.116
  5. Resource: The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains
    • Toyoyuki Takada,
    • Toshinobu Ebata,
    • Hideki Noguchi,
    • Thomas M. Keane,
    • David J. Adams,
    • Takanori Narita,
    • Tadasu Shin-I,
    • Hironori Fujisawa,
    • Atsushi Toyoda,
    • Kuniya Abe,
    • Yuichi Obata,
    • Yoshiyuki Sakaki,
    • Kazuo Moriwaki,
    • Asao Fujiyama,
    • Yuji Kohara,
    • and Toshihiko Shiroishi
    Genome Res. August 2013 23: 1329-1338; Published in Advance April 19, 2013, doi:10.1101/gr.156497.113
    OPEN ACCESS ARTICLE
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