Searching journal content for Thomas A. Down in author.

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  1. Research: Extreme HOT regions are CpG-dense promoters in C. elegans and humans
    • Ron A.-J. Chen,
    • Przemyslaw Stempor,
    • Thomas A. Down,
    • Eva Zeiser,
    • Sky K. Feuer,
    • and Julie Ahringer
    Genome Res. July 2014 24: 1138-1146; Published in Advance March 20, 2014, doi:10.1101/gr.161992.113
    OPEN ACCESS ARTICLE
  2. Resource: The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures
    • Ron A.-J. Chen,
    • Thomas A. Down,
    • Przemyslaw Stempor,
    • Q. Brent Chen,
    • Thea A. Egelhofer,
    • LaDeana W. Hillier,
    • Tess E. Jeffers,
    • and Julie Ahringer
    Genome Res. August 2013 23: 1339-1347; Published in Advance April 2, 2013, doi:10.1101/gr.153668.112
    OPEN ACCESS ARTICLE
  3. Research: A functional methylome map of ulcerative colitis
    • Robert Häsler,
    • Zhe Feng,
    • Liselotte Bäckdahl,
    • Martina E. Spehlmann,
    • Andre Franke,
    • Andrew Teschendorff,
    • Vardhman K. Rakyan,
    • Thomas A. Down,
    • Gareth A. Wilson,
    • Andrew Feber,
    • Stephan Beck,
    • Stefan Schreiber,
    • and Philip Rosenstiel
    Genome Res. November 2012 22: 2130-2137; Published in Advance July 23, 2012, doi:10.1101/gr.138347.112
    OPEN ACCESS ARTICLE
  4. Research: Guthrie card methylomics identifies temporally stable epialleles that are present at birth in humans
    • Huriya Beyan,
    • Thomas A. Down,
    • Sreeram V. Ramagopalan,
    • Kristina Uvebrant,
    • Anita Nilsson,
    • Michelle L. Holland,
    • Carolina Gemma,
    • Gavin Giovannoni,
    • Bernhard O. Boehm,
    • George C. Ebers,
    • Åke Lernmark,
    • Corrado M. Cilio,
    • R. David Leslie,
    • and Vardhman K. Rakyan
    Genome Res. November 2012 22: 2138-2145; Published in Advance August 23, 2012, doi:10.1101/gr.134304.111
  5. Research: Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates
    • Lisa Nanty,
    • Guillermo Carbajosa,
    • Graham A. Heap,
    • Francis Ratnieks,
    • David A. van Heel,
    • Thomas A. Down,
    • and Vardhman K. Rakyan
    Genome Res. November 2011 21: 1841-1850; Published in Advance September 22, 2011, doi:10.1101/gr.121640.111
  6. Research: Comparative methylome analysis of benign and malignant peripheral nerve sheath tumors
    • Andrew Feber,
    • Gareth A. Wilson,
    • Lu Zhang,
    • Nadege Presneau,
    • Bernadine Idowu,
    • Thomas A. Down,
    • Vardhman K. Rakyan,
    • Luke A. Noon,
    • Alison C. Lloyd,
    • Elia Stupka,
    • Vassia Schiza,
    • Andrew E. Teschendorff,
    • Gary P. Schroth,
    • Adrienne Flanagan,
    • and Stephan Beck
    Genome Res. April 2011 21: 515-524; Published in Advance February 1, 2011, doi:10.1101/gr.109678.110
    OPEN ACCESS ARTICLE
  7. Research: Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains
    • Vardhman K. Rakyan,
    • Thomas A. Down,
    • Siarhei Maslau,
    • Toby Andrew,
    • Tsun-Po Yang,
    • Huriya Beyan,
    • Pamela Whittaker,
    • Owen T. McCann,
    • Sarah Finer,
    • Ana M. Valdes,
    • R. David Leslie,
    • Panogiotis Deloukas,
    • and Timothy D. Spector
    Genome Res. April 2010 20: 434-439; Published in Advance March 10, 2010, doi:10.1101/gr.103101.109
  8. Letter: Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level
    • Alexander W. Bruce,
    • Andrés J. López-Contreras,
    • Paul Flicek,
    • Thomas A. Down,
    • Pawandeep Dhami,
    • Shane C. Dillon,
    • Christoph M. Koch,
    • Cordelia F. Langford,
    • Ian Dunham,
    • Robert M. Andrews,
    • and David Vetrie
    Genome Res. June 2009 19: 994-1005; Published in Advance April 28, 2009, doi:10.1101/gr.089086.108
    OPEN ACCESS ARTICLE
  9. RESOURCE: An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)
    • Vardhman K. Rakyan,
    • Thomas A. Down,
    • Natalie P. Thorne,
    • Paul Flicek,
    • Eugene Kulesha,
    • Stefan Gräf,
    • Eleni M. Tomazou,
    • Liselotte Bäckdahl,
    • Nathan Johnson,
    • Marlis Herberth,
    • Kevin L. Howe,
    • David K. Jackson,
    • Marcos M. Miretti,
    • Heike Fiegler,
    • John C. Marioni,
    • Ewan Birney,
    • Tim J.P. Hubbard,
    • Nigel P. Carter,
    • Simon Tavaré,
    • and Stephan Beck
    Genome Res. September 2008 18: 1518-1529; Published in Advance June 24, 2008, doi:10.1101/gr.077479.108
    OPEN ACCESS ARTICLE
  10. ENSEMBL Special: An Overview of Ensembl
    • Ewan Birney,
    • T. Daniel Andrews,
    • Paul Bevan,
    • Mario Caccamo,
    • Yuan Chen,
    • Laura Clarke,
    • Guy Coates,
    • James Cuff,
    • Val Curwen,
    • Tim Cutts,
    • Thomas Down,
    • Eduardo Eyras,
    • Xose M. Fernandez-Suarez,
    • Paul Gane,
    • Brian Gibbins,
    • James Gilbert,
    • Martin Hammond,
    • Hans-Rudolf Hotz,
    • Vivek Iyer,
    • Kerstin Jekosch,
    • Andreas Kahari,
    • Arek Kasprzyk,
    • Damian Keefe,
    • Stephen Keenan,
    • Heikki Lehvaslaiho,
    • Graham McVicker,
    • Craig Melsopp,
    • Patrick Meidl,
    • Emmanuel Mongin,
    • Roger Pettett,
    • Simon Potter,
    • Glenn Proctor,
    • Mark Rae,
    • Steve Searle,
    • Guy Slater,
    • Damian Smedley,
    • James Smith,
    • Will Spooner,
    • Arne Stabenau,
    • James Stalker,
    • Roy Storey,
    • Abel Ureta-Vidal,
    • K. Cara Woodwark,
    • Graham Cameron,
    • Richard Durbin,
    • Anthony Cox,
    • Tim Hubbard,
    • and Michele Clamp
    Genome Res. May 2004 14: 925-928; Published in Advance April 12, 2004, doi:10.1101/gr.1860604
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