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Terrence S. Furey
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12
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Research
:
Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
Jeremy M. Simon
,
Kathryn E. Hacker
,
Darshan Singh
,
A. Rose Brannon
,
Joel S. Parker
,
Matthew Weiser
,
Thai H. Ho
,
Pei-Fen Kuan
,
Eric Jonasch
,
Terrence S. Furey
,
Jan F. Prins
,
Jason D. Lieb
,
W. Kimryn Rathmell
,
and
Ian J. Davis
Genome Res.
February 2014
24
:
241
-
250
;
Published in Advance
October 24, 2013
,
doi:
10.1101/gr.158253.113
Abstract
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Research
:
DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types
Deborah R. Winter
,
Lingyun Song
,
Sayan Mukherjee
,
Terrence S. Furey
,
and
Gregory E. Crawford
Genome Res.
July 2013
23
:
1118
-
1129
;
Published in Advance
May 8, 2013
,
doi:
10.1101/gr.150482.112
Abstract
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Research
:
Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
Nathan C. Sheffield
,
Robert E. Thurman
,
Lingyun Song
,
Alexias Safi
,
John A. Stamatoyannopoulos
,
Boris Lenhard
,
Gregory E. Crawford
,
and
Terrence S. Furey
Genome Res.
May 2013
23
:
777
-
788
;
Published in Advance
March 12, 2013
,
doi:
10.1101/gr.152140.112
Abstract
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Method
:
Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets
Qing Xiong
,
Nicola Ancona
,
Elizabeth R. Hauser
,
Sayan Mukherjee
,
and
Terrence S. Furey
Genome Res.
February 2012
22
:
386
-
397
;
Published in Advance
September 22, 2011
,
doi:
10.1101/gr.124370.111
Abstract
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Research
:
Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
Bum-Kyu Lee
,
Akshay A. Bhinge
,
Anna Battenhouse
,
Ryan M. McDaniell
,
Zheng Liu
,
Lingyun Song
,
Yunyun Ni
,
Ewan Birney
,
Jason D. Lieb
,
Terrence S. Furey
,
Gregory E. Crawford
,
and
Vishwanath R. Iyer
Genome Res.
January 2012
22
:
9
-
24
;
Published in Advance
November 16, 2011
,
doi:
10.1101/gr.127597.111
Abstract
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Research
:
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
Weisheng Wu
,
Yong Cheng
,
Cheryl A. Keller
,
Jason Ernst
,
Swathi Ashok Kumar
,
Tejaswini Mishra
,
Christapher Morrissey
,
Christine M. Dorman
,
Kuan-Bei Chen
,
Daniela Drautz
,
Belinda Giardine
,
Yoichiro Shibata
,
Lingyun Song
,
Max Pimkin
,
Gregory E. Crawford
,
Terrence S. Furey
,
Manolis Kellis
,
Webb Miller
,
James Taylor
,
Stephan C. Schuster
,
Yu Zhang
,
Francesca Chiaromonte
,
Gerd A. Blobel
,
Mitchell J. Weiss
,
and
Ross C. Hardison
Genome Res.
October 2011
21
:
1659
-
1671
;
Published in Advance
July 27, 2011
,
doi:
10.1101/gr.125088.111
Abstract
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Resource
:
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
Lingyun Song
,
Zhancheng Zhang
,
Linda L. Grasfeder
,
Alan P. Boyle
,
Paul G. Giresi
,
Bum-Kyu Lee
,
Nathan C. Sheffield
,
Stefan Gräf
,
Mikael Huss
,
Damian Keefe
,
Zheng Liu
,
Darin London
,
Ryan M. McDaniell
,
Yoichiro Shibata
,
Kimberly A. Showers
,
Jeremy M. Simon
,
Teresa Vales
,
Tianyuan Wang
,
Deborah Winter
,
Zhuzhu Zhang
,
Neil D. Clarke
,
Ewan Birney
,
Vishwanath R. Iyer
,
Gregory E. Crawford
,
Jason D. Lieb
,
and
Terrence S. Furey
Genome Res.
October 2011
21
:
1757
-
1767
;
Published in Advance
July 12, 2011
,
doi:
10.1101/gr.121541.111
Abstract
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Method
:
High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
Alan P. Boyle
,
Lingyun Song
,
Bum-Kyu Lee
,
Darin London
,
Damian Keefe
,
Ewan Birney
,
Vishwanath R. Iyer
,
Gregory E. Crawford
,
and
Terrence S. Furey
Genome Res.
March 2011
21
:
456
-
464
;
Published in Advance
November 24, 2010
,
doi:
10.1101/gr.112656.110
Abstract
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LETTER
:
Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
Terrence S. Furey
,
Mark Diekhans
,
Yontao Lu
,
Tina A. Graves
,
Lachlan Oddy
,
Jennifer Randall-Maher
,
LaDeana W. Hillier
,
Richard K. Wilson
,
and
David Haussler
Genome Res.
October 15, 2004
14
:
2034
-
2040
;
doi:
10.1101/gr.2467904
Abstract
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ARTICLE
:
Comparative Recombination Rates in the Rat, Mouse, and Human Genomes
Michael I. Jensen-Seaman
,
Terrence S. Furey
,
Bret A. Payseur
,
Yontao Lu
,
Krishna M. Roskin
,
Chin-Fu Chen
,
Michael A. Thomas
,
David Haussler
,
and
Howard J. Jacob
Genome Res.
April 2004
14
:
528
-
538
;
doi:
10.1101/gr.1970304
Abstract
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