Searching journal content for Terrence S. Furey in author.

Displaying results 1-10 of 12
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  1. Research: Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
    • Jeremy M. Simon,
    • Kathryn E. Hacker,
    • Darshan Singh,
    • A. Rose Brannon,
    • Joel S. Parker,
    • Matthew Weiser,
    • Thai H. Ho,
    • Pei-Fen Kuan,
    • Eric Jonasch,
    • Terrence S. Furey,
    • Jan F. Prins,
    • Jason D. Lieb,
    • W. Kimryn Rathmell,
    • and Ian J. Davis
    Genome Res. February 2014 24: 241-250; Published in Advance October 24, 2013, doi:10.1101/gr.158253.113
  2. Research: DNase-seq predicts regions of rotational nucleosome stability across diverse human cell types
    • Deborah R. Winter,
    • Lingyun Song,
    • Sayan Mukherjee,
    • Terrence S. Furey,
    • and Gregory E. Crawford
    Genome Res. July 2013 23: 1118-1129; Published in Advance May 8, 2013, doi:10.1101/gr.150482.112
  3. Research: Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions
    • Nathan C. Sheffield,
    • Robert E. Thurman,
    • Lingyun Song,
    • Alexias Safi,
    • John A. Stamatoyannopoulos,
    • Boris Lenhard,
    • Gregory E. Crawford,
    • and Terrence S. Furey
    Genome Res. May 2013 23: 777-788; Published in Advance March 12, 2013, doi:10.1101/gr.152140.112
    OPEN ACCESS ARTICLE
  4. Method: Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets
    • Qing Xiong,
    • Nicola Ancona,
    • Elizabeth R. Hauser,
    • Sayan Mukherjee,
    • and Terrence S. Furey
    Genome Res. February 2012 22: 386-397; Published in Advance September 22, 2011, doi:10.1101/gr.124370.111
    OPEN ACCESS ARTICLE
  5. Research: Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
    • Bum-Kyu Lee,
    • Akshay A. Bhinge,
    • Anna Battenhouse,
    • Ryan M. McDaniell,
    • Zheng Liu,
    • Lingyun Song,
    • Yunyun Ni,
    • Ewan Birney,
    • Jason D. Lieb,
    • Terrence S. Furey,
    • Gregory E. Crawford,
    • and Vishwanath R. Iyer
    Genome Res. January 2012 22: 9-24; Published in Advance November 16, 2011, doi:10.1101/gr.127597.111
    OPEN ACCESS ARTICLE
  6. Research: Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
    • Weisheng Wu,
    • Yong Cheng,
    • Cheryl A. Keller,
    • Jason Ernst,
    • Swathi Ashok Kumar,
    • Tejaswini Mishra,
    • Christapher Morrissey,
    • Christine M. Dorman,
    • Kuan-Bei Chen,
    • Daniela Drautz,
    • Belinda Giardine,
    • Yoichiro Shibata,
    • Lingyun Song,
    • Max Pimkin,
    • Gregory E. Crawford,
    • Terrence S. Furey,
    • Manolis Kellis,
    • Webb Miller,
    • James Taylor,
    • Stephan C. Schuster,
    • Yu Zhang,
    • Francesca Chiaromonte,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. October 2011 21: 1659-1671; Published in Advance July 27, 2011, doi:10.1101/gr.125088.111
    OPEN ACCESS ARTICLE
  7. Resource: Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • Lingyun Song,
    • Zhancheng Zhang,
    • Linda L. Grasfeder,
    • Alan P. Boyle,
    • Paul G. Giresi,
    • Bum-Kyu Lee,
    • Nathan C. Sheffield,
    • Stefan Gräf,
    • Mikael Huss,
    • Damian Keefe,
    • Zheng Liu,
    • Darin London,
    • Ryan M. McDaniell,
    • Yoichiro Shibata,
    • Kimberly A. Showers,
    • Jeremy M. Simon,
    • Teresa Vales,
    • Tianyuan Wang,
    • Deborah Winter,
    • Zhuzhu Zhang,
    • Neil D. Clarke,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • Jason D. Lieb,
    • and Terrence S. Furey
    Genome Res. October 2011 21: 1757-1767; Published in Advance July 12, 2011, doi:10.1101/gr.121541.111
    OPEN ACCESS ARTICLE
  8. Method: High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells
    • Alan P. Boyle,
    • Lingyun Song,
    • Bum-Kyu Lee,
    • Darin London,
    • Damian Keefe,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • and Terrence S. Furey
    Genome Res. March 2011 21: 456-464; Published in Advance November 24, 2010, doi:10.1101/gr.112656.110
    OPEN ACCESS ARTICLE
  9. LETTER: Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
    • Terrence S. Furey,
    • Mark Diekhans,
    • Yontao Lu,
    • Tina A. Graves,
    • Lachlan Oddy,
    • Jennifer Randall-Maher,
    • LaDeana W. Hillier,
    • Richard K. Wilson,
    • and David Haussler
    Genome Res. October 15, 2004 14: 2034-2040; doi:10.1101/gr.2467904
  10. ARTICLE: Comparative Recombination Rates in the Rat, Mouse, and Human Genomes
    • Michael I. Jensen-Seaman,
    • Terrence S. Furey,
    • Bret A. Payseur,
    • Yontao Lu,
    • Krishna M. Roskin,
    • Chin-Fu Chen,
    • Michael A. Thomas,
    • David Haussler,
    • and Howard J. Jacob
    Genome Res. April 2004 14: 528-538; doi:10.1101/gr.1970304
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