Searching journal content for Terence D. Murphy in author.

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  1. Resource: Construction and evaluation of a new rat reference genome assembly, GRCr8, from long reads and long-range scaffolding
    • Kai Li,
    • Melissa L. Smith,
    • J. Chris Blazier,
    • Kelli J. Kochan,
    • Jonathan M.D. Wood,
    • Kerstin Howe,
    • Anne E. Kwitek,
    • Melinda R. Dwinell,
    • Hao Chen,
    • Julia L. Ciosek,
    • Patrick Masterson,
    • Terence D. Murphy,
    • Theodore S. Kalbfleisch,
    • and Peter A. Doris
    Genome Res. November 2024 34: 2081-2093; Published in Advance November 8, 2024, doi:10.1101/gr.279292.124
  2. Resource: RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse
    • Catherine M. Farrell,
    • Tamara Goldfarb,
    • Sanjida H. Rangwala,
    • Alexander Astashyn,
    • Olga D. Ermolaeva,
    • Vichet Hem,
    • Kenneth S. Katz,
    • Vamsi K. Kodali,
    • Frank Ludwig,
    • Craig L. Wallin,
    • Kim D. Pruitt,
    • and Terence D. Murphy
    Genome Res. January 2022 32: 175-188; Published in Advance December 7, 2021, doi:10.1101/gr.275819.121
  3. Resource: Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
    • Valerie A. Schneider,
    • Tina Graves-Lindsay,
    • Kerstin Howe,
    • Nathan Bouk,
    • Hsiu-Chuan Chen,
    • Paul A. Kitts,
    • Terence D. Murphy,
    • Kim D. Pruitt,
    • Françoise Thibaud-Nissen,
    • Derek Albracht,
    • Robert S. Fulton,
    • Milinn Kremitzki,
    • Vincent Magrini,
    • Chris Markovic,
    • Sean McGrath,
    • Karyn Meltz Steinberg,
    • Kate Auger,
    • William Chow,
    • Joanna Collins,
    • Glenn Harden,
    • Timothy Hubbard,
    • Sarah Pelan,
    • Jared T. Simpson,
    • Glen Threadgold,
    • James Torrance,
    • Jonathan M. Wood,
    • Laura Clarke,
    • Sergey Koren,
    • Matthew Boitano,
    • Paul Peluso,
    • Heng Li,
    • Chen-Shan Chin,
    • Adam M. Phillippy,
    • Richard Durbin,
    • Richard K. Wilson,
    • Paul Flicek,
    • Evan E. Eichler,
    • and Deanna M. Church
    Genome Res. May 2017 27: 849-864; Published in Advance April 10, 2017, doi:10.1101/gr.213611.116
    OPEN ACCESS ARTICLE
  4. Resource: The completion of the Mammalian Gene Collection (MGC)
    • The MGC Project Team,
    • Gary Temple,
    • Daniela S. Gerhard,
    • Rebekah Rasooly,
    • Elise A. Feingold,
    • Peter J. Good,
    • Cristen Robinson,
    • Allison Mandich,
    • Jeffrey G. Derge,
    • Jeanne Lewis,
    • Debonny Shoaf,
    • Francis S. Collins,
    • Wonhee Jang,
    • Lukas Wagner,
    • Carolyn M. Shenmen,
    • Leonie Misquitta,
    • Carl F. Schaefer,
    • Kenneth H. Buetow,
    • Tom I. Bonner,
    • Linda Yankie,
    • Ming Ward,
    • Lon Phan,
    • Alex Astashyn,
    • Garth Brown,
    • Catherine Farrell,
    • Jennifer Hart,
    • Melissa Landrum,
    • Bonnie L. Maidak,
    • Michael Murphy,
    • Terence Murphy,
    • Bhanu Rajput,
    • Lillian Riddick,
    • David Webb,
    • Janet Weber,
    • Wendy Wu,
    • Kim D. Pruitt,
    • Donna Maglott,
    • Adam Siepel,
    • Brona Brejova,
    • Mark Diekhans,
    • Rachel Harte,
    • Robert Baertsch,
    • Jim Kent,
    • David Haussler,
    • Michael Brent,
    • Laura Langton,
    • Charles L.G. Comstock,
    • Michael Stevens,
    • Chaochun Wei,
    • Marijke J. van Baren,
    • Kourosh Salehi-Ashtiani,
    • Ryan R. Murray,
    • Lila Ghamsari,
    • Elizabeth Mello,
    • Chenwei Lin,
    • Christa Pennacchio,
    • Kirsten Schreiber,
    • Nicole Shapiro,
    • Amber Marsh,
    • Elizabeth Pardes,
    • Troy Moore,
    • Anita Lebeau,
    • Mike Muratet,
    • Blake Simmons,
    • David Kloske,
    • Stephanie Sieja,
    • James Hudson,
    • Praveen Sethupathy,
    • Michael Brownstein,
    • Narayan Bhat,
    • Joseph Lazar,
    • Howard Jacob,
    • Chris E. Gruber,
    • Mark R. Smith,
    • John McPherson,
    • Angela M. Garcia,
    • Preethi H. Gunaratne,
    • Jiaqian Wu,
    • Donna Muzny,
    • Richard A. Gibbs,
    • Alice C. Young,
    • Gerard G. Bouffard,
    • Robert W. Blakesley,
    • Jim Mullikin,
    • Eric D. Green,
    • Mark C. Dickson,
    • Alex C. Rodriguez,
    • Jane Grimwood,
    • Jeremy Schmutz,
    • Richard M. Myers,
    • Martin Hirst,
    • Thomas Zeng,
    • Kane Tse,
    • Michelle Moksa,
    • Merinda Deng,
    • Kevin Ma,
    • Diana Mah,
    • Johnson Pang,
    • Greg Taylor,
    • Eric Chuah,
    • Athena Deng,
    • Keith Fichter,
    • Anne Go,
    • Stephanie Lee,
    • Jing Wang,
    • Malachi Griffith,
    • Ryan Morin,
    • Richard A. Moore,
    • Michael Mayo,
    • Sarah Munro,
    • Susan Wagner,
    • Steven J.M. Jones,
    • Robert A. Holt,
    • Marco A. Marra,
    • Sun Lu,
    • Shuwei Yang,
    • James Hartigan,
    • Marcus Graf,
    • Ralf Wagner,
    • Stanley Letovksy,
    • Jacqueline C. Pulido,
    • Keith Robison,
    • Dominic Esposito,
    • James Hartley,
    • Vanessa E. Wall,
    • Ralph F. Hopkins,
    • Osamu Ohara,
    • and Stefan Wiemann
    Genome Res. December 2009 19: 2324-2333; Published in Advance September 18, 2009, doi:10.1101/gr.095976.109
  5. Resource: The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
    • Kim D. Pruitt,
    • Jennifer Harrow,
    • Rachel A. Harte,
    • Craig Wallin,
    • Mark Diekhans,
    • Donna R. Maglott,
    • Steve Searle,
    • Catherine M. Farrell,
    • Jane E. Loveland,
    • Barbara J. Ruef,
    • Elizabeth Hart,
    • Marie-Marthe Suner,
    • Melissa J. Landrum,
    • Bronwen Aken,
    • Sarah Ayling,
    • Robert Baertsch,
    • Julio Fernandez-Banet,
    • Joshua L. Cherry,
    • Val Curwen,
    • Michael DiCuccio,
    • Manolis Kellis,
    • Jennifer Lee,
    • Michael F. Lin,
    • Michael Schuster,
    • Andrew Shkeda,
    • Clara Amid,
    • Garth Brown,
    • Oksana Dukhanina,
    • Adam Frankish,
    • Jennifer Hart,
    • Bonnie L. Maidak,
    • Jonathan Mudge,
    • Michael R. Murphy,
    • Terence Murphy,
    • Jeena Rajan,
    • Bhanu Rajput,
    • Lillian D. Riddick,
    • Catherine Snow,
    • Charles Steward,
    • David Webb,
    • Janet A. Weber,
    • Laurens Wilming,
    • Wenyu Wu,
    • Ewan Birney,
    • David Haussler,
    • Tim Hubbard,
    • James Ostell,
    • Richard Durbin,
    • and David Lipman
    Genome Res. July 2009 19: 1316-1323; Published in Advance June 4, 2009, doi:10.1101/gr.080531.108
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