Searching journal content for T M Smith in author.

Displaying results 1-10 of 16
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  1. Resource: Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history
    • Yang Zhou,
    • Lv Yang,
    • Xiaotao Han,
    • Jiazheng Han,
    • Yan Hu,
    • Fan Li,
    • Han Xia,
    • Lingwei Peng,
    • Clarissa Boschiero,
    • Benjamin D. Rosen,
    • Derek M. Bickhart,
    • Shujun Zhang,
    • Aizhen Guo,
    • Curtis P. Van Tassell,
    • Timothy P.L. Smith,
    • Liguo Yang,
    • and George E. Liu
    Genome Res. August 2022 32: 1585-1601; Published in Advance August 17, 2022, doi:10.1101/gr.276550.122
  2. Method: Variations in antibody repertoires correlate with vaccine responses
    • Yana Safonova,
    • Sung Bong Shin,
    • Luke Kramer,
    • James Reecy,
    • Corey T. Watson,
    • Timothy P.L. Smith,
    • and Pavel A. Pevzner
    Genome Res. April 2022 32: 791-804; Published in Advance March 31, 2022, doi:10.1101/gr.276027.121
  3. Method: UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
    • Tom Smith,
    • Andreas Heger,
    • and Ian Sudbery
    Genome Res. March 2017 27: 491-499; Published in Advance January 18, 2017, doi:10.1101/gr.209601.116
    OPEN ACCESS ARTICLE
  4. Resource: Detecting copy number variation with mated short reads
    • Paul Medvedev,
    • Marc Fiume,
    • Misko Dzamba,
    • Tim Smith,
    • and Michael Brudno
    Genome Res. November 2010 20: 1613-1622; Published in Advance August 30, 2010, doi:10.1101/gr.106344.110
  5. Resource: Analysis of copy number variations among diverse cattle breeds
    • George E. Liu,
    • Yali Hou,
    • Bin Zhu,
    • Maria Francesca Cardone,
    • Lu Jiang,
    • Angelo Cellamare,
    • Apratim Mitra,
    • Leeson J. Alexander,
    • Luiz L. Coutinho,
    • Maria Elena Dell'Aquila,
    • Lou C. Gasbarre,
    • Gianni Lacalandra,
    • Robert W. Li,
    • Lakshmi K. Matukumalli,
    • Dan Nonneman,
    • Luciana C. de A. Regitano,
    • Tim P.L. Smith,
    • Jiuzhou Song,
    • Tad S. Sonstegard,
    • Curt P. Van Tassell,
    • Mario Ventura,
    • Evan E. Eichler,
    • Tara G. McDaneld,
    • and John W. Keele
    Genome Res. May 2010 20: 693-703; Published in Advance March 8, 2010, doi:10.1101/gr.105403.110
  6. 12 Drosophila Genomes/Letter: Genome-scale analysis of positionally relocated genes
    • Arjun Bhutkar,
    • Susan M. Russo,
    • Temple F. Smith,
    • and William M. Gelbart
    Genome Res. December 2007 17: 1880-1887; Published in Advance November 7, 2007, doi:10.1101/gr.7062307
    OPEN ACCESS ARTICLE
  7. LETTER: Callipyge mutation affects gene expression in cis: A potential role for chromatin structure
    • Susan K. Murphy,
    • Catherine M. Nolan,
    • Zhiqing Huang,
    • Katerina S. Kucera,
    • Brad A. Freking,
    • Timothy P.L. Smith,
    • Kreg A. Leymaster,
    • Jennifer R. Weidman,
    • and Randy L. Jirtle
    Genome Res. March 2006 16: 340-346; Published in Advance January 13, 2006, doi:10.1101/gr.4389306
  8. RESOURCE: An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands
    • Zunyan Dai,
    • Dieter Weichenhan,
    • Yue-Zhong Wu,
    • Julia L Hall,
    • Laura J. Rush,
    • Laura T. Smith,
    • Aparna Raval,
    • Li Yu,
    • Daniela Kroll,
    • Joerg Muehlisch,
    • Michael C. Frühwald,
    • Pieter de Jong,
    • Joe Catanese,
    • Ramana V. Davuluri,
    • Dominic J. Smiraglia,
    • and Christoph Plass
    Genome Res. October 1, 2002 12: 1591-1598; doi:10.1101/gr.197402
  9. LETTER: Identification of the Single Base Change Causing the Callipyge Muscle Hypertrophy Phenotype, the Only Known Example of Polar Overdominance in Mammals
    • Brad A. Freking,
    • Susan K. Murphy,
    • Andrew A. Wylie,
    • Simon J. Rhodes,
    • John W. Keele,
    • Kreg A. Leymaster,
    • Randy L. Jirtle,
    • and Timothy P.L. Smith
    Genome Res. October 1, 2002 12: 1496-1506; Published in Advance September 13, 2002, doi:10.1101/gr.571002
  10. RESOURCE: Sequence Evaluation of Four Pooled-Tissue Normalized Bovine cDNA Libraries and Construction of a Gene Index for Cattle
    • Timothy P.L. Smith,
    • William M. Grosse,
    • Brad A. Freking,
    • Andrew J. Roberts,
    • Roger T. Stone,
    • Eduardo Casas,
    • James E. Wray,
    • Joseph White,
    • Jennifer Cho,
    • Scott C. Fahrenkrug,
    • Gary L. Bennett,
    • Michael P. Heaton,
    • William W. Laegreid,
    • Gary A. Rohrer,
    • Carol G. Chitko-McKown,
    • Geo Pertea,
    • Ingeborg Holt,
    • Svetlana Karamycheva,
    • Feng Liang,
    • John Quackenbush,
    • and John W. Keele
    Genome Res. April 1, 2001 11: 626-630; doi:10.1101/gr.170101
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