Searching journal content for Sushmita Roy in author.

Displaying results 1-8 of 8
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  1. Research: Multi-species analysis of inflammatory response elements reveals ancient and lineage-specific contributions of transposable elements to NF-kB binding
    • Liangxi Wang,
    • Tiegh Taylor,
    • Kumaragurubaran Rathnakumar,
    • Nadiya Khyzha,
    • Minggao Liang,
    • Azad Alizada,
    • Laura F. Campitelli,
    • Sara E. Pour,
    • Zain M. Patel,
    • Lina Antounians,
    • Ian C. Tobias,
    • Huayun Hou,
    • Timothy R. Hughes,
    • Sushmita Roy,
    • Jennifer A. Mitchell,
    • Jason E. Fish,
    • and Michael D. Wilson
    Genome Res. July 2025 35: 1544-1559; Published in Advance June 6, 2025, doi:10.1101/gr.280357.124
  2. Method: Examining the dynamics of three-dimensional genome organization with multitask matrix factorization
    • Da-Inn Lee and
    • Sushmita Roy
    Genome Res. May 2025 35: 1179-1193; Published in Advance March 20, 2025, doi:10.1101/gr.279930.124
  3. Method: Dynamic regulatory module networks for inference of cell type–specific transcriptional networks
    • Alireza Fotuhi Siahpirani,
    • Sara Knaack,
    • Deborah Chasman,
    • Morten Seirup,
    • Rupa Sridharan,
    • Ron Stewart,
    • James Thomson,
    • and Sushmita Roy
    Genome Res. July 2022 32: 1367-1384; Published in Advance June 15, 2022, doi:10.1101/gr.276542.121
    OPEN ACCESS ARTICLE
  4. Research: Identification of FMR1-regulated molecular networks in human neurodevelopment
    • Meng Li,
    • Junha Shin,
    • Ryan D. Risgaard,
    • Molly J. Parries,
    • Jianyi Wang,
    • Deborah Chasman,
    • Shuang Liu,
    • Sushmita Roy,
    • Anita Bhattacharyya,
    • and Xinyu Zhao
    Genome Res. March 2020 30: 361-374; Published in Advance March 16, 2020, doi:10.1101/gr.251405.119
  5. Method: Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
    • Sushmita Roy and
    • Rupa Sridharan
    Genome Res. July 2017 27: 1250-1262; Published in Advance April 19, 2017, doi:10.1101/gr.215004.116
    OPEN ACCESS ARTICLE
  6. Method: Arboretum: Reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules
    • Sushmita Roy,
    • Ilan Wapinski,
    • Jenna Pfiffner,
    • Courtney French,
    • Amanda Socha,
    • Jay Konieczka,
    • Naomi Habib,
    • Manolis Kellis,
    • Dawn Thompson,
    • and Aviv Regev
    Genome Res. June 2013 23: 1039-1050; Published in Advance May 2, 2013, doi:10.1101/gr.146233.112
  7. Method: Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks
    • Daniel Marbach,
    • Sushmita Roy,
    • Ferhat Ay,
    • Patrick E. Meyer,
    • Rogerio Candeias,
    • Tamer Kahveci,
    • Christopher A. Bristow,
    • and Manolis Kellis
    Genome Res. July 2012 22: 1334-1349; Published in Advance March 28, 2012, doi:10.1101/gr.127191.111
  8. 12 Drosophila Genomes/Methods: Reliable prediction of regulator targets using 12 Drosophila genomes
    • Pouya Kheradpour,
    • Alexander Stark,
    • Sushmita Roy,
    • and Manolis Kellis
    Genome Res. December 2007 17: 1919-1931; Published in Advance November 7, 2007, doi:10.1101/gr.7090407
    OPEN ACCESS ARTICLE
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