Searching journal content for Susan J. Clark in author.

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  1. Research: Enduring epigenetic landmarks define the cancer microenvironment
    • Ruth Pidsley,
    • Mitchell G. Lawrence,
    • Elena Zotenko,
    • Birunthi Niranjan,
    • Aaron Statham,
    • Jenny Song,
    • Roman M. Chabanon,
    • Wenjia Qu,
    • Hong Wang,
    • Michelle Richards,
    • Shalima S. Nair,
    • Nicola J. Armstrong,
    • Hieu T. Nim,
    • Melissa Papargiris,
    • Preetika Balanathan,
    • Hugh French,
    • Timothy Peters,
    • Sam Norden,
    • Andrew Ryan,
    • John Pedersen,
    • James Kench,
    • Roger J. Daly,
    • Lisa G. Horvath,
    • Phillip Stricker,
    • Mark Frydenberg,
    • Renea A. Taylor,
    • Clare Stirzaker,
    • Gail P. Risbridger,
    • and Susan J. Clark
    Genome Res. May 2018 28: 625-638; Published in Advance April 12, 2018, doi:10.1101/gr.229070.117
    OPEN ACCESS ARTICLE
  2. Research: Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
    • Phillippa C. Taberlay,
    • Joanna Achinger-Kawecka,
    • Aaron T.L. Lun,
    • Fabian A. Buske,
    • Kenneth Sabir,
    • Cathryn M. Gould,
    • Elena Zotenko,
    • Saul A. Bert,
    • Katherine A. Giles,
    • Denis C. Bauer,
    • Gordon K. Smyth,
    • Clare Stirzaker,
    • Sean I. O'Donoghue,
    • and Susan J. Clark
    Genome Res. June 2016 26: 719-731; Published in Advance April 6, 2016, doi:10.1101/gr.201517.115
  3. Research: Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
    • Phillippa C. Taberlay,
    • Aaron L. Statham,
    • Theresa K. Kelly,
    • Susan J. Clark,
    • and Peter A. Jones
    Genome Res. September 2014 24: 1421-1432; Published in Advance June 10, 2014, doi:10.1101/gr.163485.113
    OPEN ACCESS ARTICLE
  4. Method: Copy-number-aware differential analysis of quantitative DNA sequencing data
    • Mark D. Robinson,
    • Dario Strbenac,
    • Clare Stirzaker,
    • Aaron L. Statham,
    • Jenny Song,
    • Terence P. Speed,
    • and Susan J. Clark
    Genome Res. December 2012 22: 2489-2496; Published in Advance August 9, 2012, doi:10.1101/gr.139055.112
    OPEN ACCESS ARTICLE
  5. Method: Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA
    • Aaron L. Statham,
    • Mark D. Robinson,
    • Jenny Z. Song,
    • Marcel W. Coolen,
    • Clare Stirzaker,
    • and Susan J. Clark
    Genome Res. June 2012 22: 1120-1127; Published in Advance March 30, 2012, doi:10.1101/gr.132076.111
  6. Research: Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer
    • Fátima Valdés-Mora,
    • Jenny Z. Song,
    • Aaron L. Statham,
    • Dario Strbenac,
    • Mark D. Robinson,
    • Shalima S. Nair,
    • Kate I. Patterson,
    • David J. Tremethick,
    • Clare Stirzaker,
    • and Susan J. Clark
    Genome Res. February 2012 22: 307-321; Published in Advance July 25, 2011, doi:10.1101/gr.118919.110
  7. Method: Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
    • Mark D. Robinson,
    • Clare Stirzaker,
    • Aaron L. Statham,
    • Marcel W. Coolen,
    • Jenny Z. Song,
    • Shalima S. Nair,
    • Dario Strbenac,
    • Terence P. Speed,
    • and Susan J. Clark
    Genome Res. December 2010 20: 1719-1729; Published in Advance November 2, 2010, doi:10.1101/gr.110601.110
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