Searching journal content for Susan E. Celniker in author.

Displaying results 1-10 of 12
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  1. Resource: Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships
    • Michelle Kudron,
    • Louis Gevirtzman,
    • Alec Victorsen,
    • Bridget C. Lear,
    • Jiahao Gao,
    • Jinrui Xu,
    • Swapna Samanta,
    • Emily Frink,
    • Adri Tran-Pearson,
    • Chau Huynh,
    • Dionne Vafeados,
    • Ann Hammonds,
    • William Fisher,
    • Martha Wall,
    • Greg Wesseling,
    • Vanessa Hernandez,
    • Zhichun Lin,
    • Mary Kasparian,
    • Kevin White,
    • Ravi Allada,
    • Mark Gerstein,
    • LaDeana Hillier,
    • Susan E. Celniker,
    • Valerie Reinke,
    • and Robert H. Waterston
    Genome Res. December 2024 34: 2319-2334; Published in Advance October 22, 2024, doi:10.1101/gr.279037.124
  2. Research: Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila
    • Marcus H. Stoiber,
    • Sara Olson,
    • Gemma E. May,
    • Michael O. Duff,
    • Jan Manent,
    • Robert Obar,
    • K.G. Guruharsha,
    • Peter J. Bickel,
    • Spyros Artavanis-Tsakonas,
    • James B. Brown,
    • Brenton R. Graveley,
    • and Susan E. Celniker
    Genome Res. November 2015 25: 1692-1702; Published in Advance August 20, 2015, doi:10.1101/gr.182675.114
    OPEN ACCESS ARTICLE
  3. Resource: Regulation of alternative splicing in Drosophila by 56 RNA binding proteins
    • Angela N. Brooks,
    • Michael O. Duff,
    • Gemma May,
    • Li Yang,
    • Mohan Bolisetty,
    • Jane Landolin,
    • Ken Wan,
    • Jeremy Sandler,
    • Benjamin W. Booth,
    • Susan E. Celniker,
    • Brenton R. Graveley,
    • and Steven E. Brenner
    Genome Res. November 2015 25: 1771-1780; Published in Advance August 20, 2015, doi:10.1101/gr.192518.115
    OPEN ACCESS ARTICLE
  4. Resource: The Release 6 reference sequence of the Drosophila melanogaster genome
    • Roger A. Hoskins,
    • Joseph W. Carlson,
    • Kenneth H. Wan,
    • Soo Park,
    • Ivonne Mendez,
    • Samuel E. Galle,
    • Benjamin W. Booth,
    • Barret D. Pfeiffer,
    • Reed A. George,
    • Robert Svirskas,
    • Martin Krzywinski,
    • Jacqueline Schein,
    • Maria Carmela Accardo,
    • Elisabetta Damia,
    • Giovanni Messina,
    • María Méndez-Lago,
    • Beatriz de Pablos,
    • Olga V. Demakova,
    • Evgeniya N. Andreyeva,
    • Lidiya V. Boldyreva,
    • Marco Marra,
    • A. Bernardo Carvalho,
    • Patrizio Dimitri,
    • Alfredo Villasante,
    • Igor F. Zhimulev,
    • Gerald M. Rubin,
    • Gary H. Karpen,
    • and Susan E. Celniker
    Genome Res. March 2015 25: 445-458; Published in Advance January 14, 2015, doi:10.1101/gr.185579.114
    OPEN ACCESS ARTICLE
  5. Resource: Comparative validation of the D. melanogaster modENCODE transcriptome annotation
    • Zhen-Xia Chen,
    • David Sturgill,
    • Jiaxin Qu,
    • Huaiyang Jiang,
    • Soo Park,
    • Nathan Boley,
    • Ana Maria Suzuki,
    • Anthony R. Fletcher,
    • David C. Plachetzki,
    • Peter C. FitzGerald,
    • Carlo G. Artieri,
    • Joel Atallah,
    • Olga Barmina,
    • James B. Brown,
    • Kerstin P. Blankenburg,
    • Emily Clough,
    • Abhijit Dasgupta,
    • Sai Gubbala,
    • Yi Han,
    • Joy C. Jayaseelan,
    • Divya Kalra,
    • Yoo-Ah Kim,
    • Christie L. Kovar,
    • Sandra L. Lee,
    • Mingmei Li,
    • James D. Malley,
    • John H. Malone,
    • Tittu Mathew,
    • Nicolas R. Mattiuzzo,
    • Mala Munidasa,
    • Donna M. Muzny,
    • Fiona Ongeri,
    • Lora Perales,
    • Teresa M. Przytycka,
    • Ling-Ling Pu,
    • Garrett Robinson,
    • Rebecca L. Thornton,
    • Nehad Saada,
    • Steven E. Scherer,
    • Harold E. Smith,
    • Charles Vinson,
    • Crystal B. Warner,
    • Kim C. Worley,
    • Yuan-Qing Wu,
    • Xiaoyan Zou,
    • Peter Cherbas,
    • Manolis Kellis,
    • Michael B. Eisen,
    • Fabio Piano,
    • Karin Kionte,
    • David H. Fitch,
    • Paul W. Sternberg,
    • Asher D. Cutter,
    • Michael O. Duff,
    • Roger A. Hoskins,
    • Brenton R. Graveley,
    • Richard A. Gibbs,
    • Peter J. Bickel,
    • Artyom Kopp,
    • Piero Carninci,
    • Susan E. Celniker,
    • Brian Oliver,
    • and Stephen Richards
    Genome Res. July 2014 24: 1209-1223; Published in Advance July 1, 2014, doi:10.1101/gr.159384.113
    OPEN ACCESS ARTICLE
  6. Research: Global analysis of Drosophila Cys2-His2 zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants
    • Metewo Selase Enuameh,
    • Yuna Asriyan,
    • Adam Richards,
    • Ryan G. Christensen,
    • Victoria L. Hall,
    • Majid Kazemian,
    • Cong Zhu,
    • Hannah Pham,
    • Qiong Cheng,
    • Charles Blatti,
    • Jessie A. Brasefield,
    • Matthew D. Basciotta,
    • Jianhong Ou,
    • Joseph C. McNulty,
    • Lihua J. Zhu,
    • Susan E. Celniker,
    • Saurabh Sinha,
    • Gary D. Stormo,
    • Michael H. Brodsky,
    • and Scot A. Wolfe
    Genome Res. June 2013 23: 928-940; Published in Advance March 7, 2013, doi:10.1101/gr.151472.112
  7. Research: Genome-wide analysis of promoter architecture in Drosophila melanogaster
    • Roger A. Hoskins,
    • Jane M. Landolin,
    • James B. Brown,
    • Jeremy E. Sandler,
    • Hazuki Takahashi,
    • Timo Lassmann,
    • Charles Yu,
    • Benjamin W. Booth,
    • Dayu Zhang,
    • Kenneth H. Wan,
    • Li Yang,
    • Nathan Boley,
    • Justen Andrews,
    • Thomas C. Kaufman,
    • Brenton R. Graveley,
    • Peter J. Bickel,
    • Piero Carninci,
    • Joseph W. Carlson,
    • and Susan E. Celniker
    Genome Res. February 2011 21: 182-192; Published in Advance December 22, 2010, doi:10.1101/gr.112466.110
    OPEN ACCESS ARTICLE
  8. Resource: The transcriptional diversity of 25 Drosophila cell lines
    • Lucy Cherbas,
    • Aarron Willingham,
    • Dayu Zhang,
    • Li Yang,
    • Yi Zou,
    • Brian D. Eads,
    • Joseph W. Carlson,
    • Jane M. Landolin,
    • Philipp Kapranov,
    • Jacqueline Dumais,
    • Anastasia Samsonova,
    • Jeong-Hyeon Choi,
    • Johnny Roberts,
    • Carrie A. Davis,
    • Haixu Tang,
    • Marijke J. van Baren,
    • Srinka Ghosh,
    • Alexander Dobin,
    • Kim Bell,
    • Wei Lin,
    • Laura Langton,
    • Michael O. Duff,
    • Aaron E. Tenney,
    • Chris Zaleski,
    • Michael R. Brent,
    • Roger A. Hoskins,
    • Thomas C. Kaufman,
    • Justen Andrews,
    • Brenton R. Graveley,
    • Norbert Perrimon,
    • Susan E. Celniker,
    • Thomas R. Gingeras,
    • and Peter Cherbas
    Genome Res. February 2011 21: 301-314; Published in Advance December 22, 2010, doi:10.1101/gr.112961.110
    OPEN ACCESS ARTICLE
  9. 12 Drosophila Genomes/Letter: Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes
    • Michael F. Lin,
    • Joseph W. Carlson,
    • Madeline A. Crosby,
    • Beverley B. Matthews,
    • Charles Yu,
    • Soo Park,
    • Kenneth H. Wan,
    • Andrew J. Schroeder,
    • L. Sian Gramates,
    • Susan E. St. Pierre,
    • Margaret Roark,
    • Kenneth L. Wiley, Jr.,
    • Rob J. Kulathinal,
    • Peili Zhang,
    • Kyl V. Myrick,
    • Jerry V. Antone,
    • Susan E. Celniker,
    • William M. Gelbart,
    • and Manolis Kellis
    Genome Res. December 2007 17: 1823-1836; Published in Advance November 7, 2007, doi:10.1101/gr.6679507
    OPEN ACCESS ARTICLE
  10. 12 Drosophila Genomes/Letter: Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase
    • Alfredo Villasante,
    • José P. Abad,
    • Rosario Planelló,
    • María Méndez-Lago,
    • Susan E. Celniker,
    • and Beatriz de Pablos
    Genome Res. December 2007 17: 1909-1918; Published in Advance November 7, 2007, doi:10.1101/gr.6365107
    OPEN ACCESS ARTICLE
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