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Sumio Sugano
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12
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:
Coelacanth genomes reveal signatures for evolutionary transition from water to land
Masato Nikaido
,
Hideki Noguchi
,
Hidenori Nishihara
,
Atsushi Toyoda
,
Yutaka Suzuki
,
Rei Kajitani
,
Hikoyu Suzuki
,
Miki Okuno
,
Mitsuto Aibara
,
Benjamin P. Ngatunga
,
Semvua I. Mzighani
,
Hassan W.J. Kalombo
,
Kawilarang W.A. Masengi
,
Josef Tuda
,
Sadao Nogami
,
Ryuichiro Maeda
,
Masamitsu Iwata
,
Yoshitaka Abe
,
Koji Fujimura
,
Masataka Okabe
,
Takanori Amano
,
Akiteru Maeno
,
Toshihiko Shiroishi
,
Takehiko Itoh
,
Sumio Sugano
,
Yuji Kohara
,
Asao Fujiyama
,
and
Norihiro Okada
Genome Res.
October 2013
23
:
1740
-
1748
;
Published in Advance
July 22, 2013
,
doi:
10.1101/gr.158105.113
Abstract
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Research
:
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
Wei Qu
,
Shin-ichi Hashimoto
,
Atsuko Shimada
,
Yoichiro Nakatani
,
Kazuki Ichikawa
,
Taro L. Saito
,
Katsumi Ogoshi
,
Kouji Matsushima
,
Yutaka Suzuki
,
Sumio Sugano
,
Hiroyuki Takeda
,
and
Shinichi Morishita
Genome Res.
August 2012
22
:
1419
-
1425
;
Published in Advance
June 11, 2012
,
doi:
10.1101/gr.140236.112
Abstract
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:
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
Riu Yamashita
,
Nuankanya P. Sathira
,
Akinori Kanai
,
Kousuke Tanimoto
,
Takako Arauchi
,
Yoshiaki Tanaka
,
Shin-ichi Hashimoto
,
Sumio Sugano
,
Kenta Nakai
,
and
Yutaka Suzuki
Genome Res.
May 2011
21
:
775
-
789
;
Published in Advance
March 3, 2011
,
doi:
10.1101/gr.110254.110
Abstract
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LETTER
:
Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes
Katsuki Tsuritani
,
Takuma Irie
,
Riu Yamashita
,
Yuta Sakakibara
,
Hiroyuki Wakaguri
,
Akinori Kanai
,
Junko Mizushima-Sugano
,
Sumio Sugano
,
Kenta Nakai
,
and
Yutaka Suzuki
Genome Res.
July 2007
17
:
1005
-
1014
;
Published in Advance
June 13, 2007
,
doi:
10.1101/gr.6030107
Abstract
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LETTER
:
Common inheritance of chromosome Ia associated with clonal expansion of
Toxoplasma gondii
Asis Khan
,
Ulrike Böhme
,
Krystyna A. Kelly
,
Ellen Adlem
,
Karen Brooks
,
Mark Simmonds
,
Karen Mungall
,
Michael A. Quail
,
Claire Arrowsmith
,
Tracey Chillingworth
,
Carol Churcher
,
David Harris
,
Matthew Collins
,
Nigel Fosker
,
Audrey Fraser
,
Zahra Hance
,
Kay Jagels
,
Sharon Moule
,
Lee Murphy
,
Susan O'Neil
,
Marie-Adele Rajandream
,
David Saunders
,
Kathy Seeger
,
Sally Whitehead
,
Thomas Mayr
,
Xuenan Xuan
,
Junichi Watanabe
,
Yutaka Suzuki
,
Hiroyuki Wakaguri
,
Sumio Sugano
,
Chihiro Sugimoto
,
Ian Paulsen
,
Aaron J. Mackey
,
David S. Roos
,
Neil Hall
,
Matthew Berriman
,
Bart Barrell
,
L. David Sibley
,
and
James W. Ajioka
Genome Res.
September 2006
16
:
1119
-
1125
;
Published in Advance
August 10, 2006
,
doi:
10.1101/gr.5318106
Abstract
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LETTER
:
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Kouichi Kimura
,
Ai Wakamatsu
,
Yutaka Suzuki
,
Toshio Ota
,
Tetsuo Nishikawa
,
Riu Yamashita
,
Jun-ichi Yamamoto
,
Mitsuo Sekine
,
Katsuki Tsuritani
,
Hiroyuki Wakaguri
,
Shizuko Ishii
,
Tomoyasu Sugiyama
,
Kaoru Saito
,
Yuko Isono
,
Ryotaro Irie
,
Norihiro Kushida
,
Takahiro Yoneyama
,
Rie Otsuka
,
Katsuhiro Kanda
,
Takahide Yokoi
,
Hiroshi Kondo
,
Masako Wagatsuma
,
Katsuji Murakawa
,
Shinichi Ishida
,
Tadashi Ishibashi
,
Asako Takahashi-Fujii
,
Tomoo Tanase
,
Keiichi Nagai
,
Hisashi Kikuchi
,
Kenta Nakai
,
Takao Isogai
,
and
Sumio Sugano
Genome Res.
January 2006
16
:
55
-
65
;
Published in Advance
December 12, 2005
,
doi:
10.1101/gr.4039406
Abstract
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LETTER
:
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
Masaaki Oyama
,
Chiharu Itagaki
,
Hiroko Hata
,
Yutaka Suzuki
,
Tomonori Izumi
,
Tohru Natsume
,
Toshiaki Isobe
,
and
Sumio Sugano
Genome Res.
October 15, 2004
14
:
2048
-
2052
;
doi:
10.1101/gr.2384604
Abstract
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LETTER
:
Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
Yutaka Suzuki
,
Riu Yamashita
,
Matsuyuki Shirota
,
Yuta Sakakibara
,
Joe Chiba
,
Junko Mizushima-Sugano
,
Kenta Nakai
,
and
Sumio Sugano
Genome Res.
September 2004
14
:
1711
-
1718
;
doi:
10.1101/gr.2435604
Abstract
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RESOURCE
:
Fugu
ESTs: New Resources for Transcription Analysis and Genome Annotation
Melody S. Clark
,
Yvonne J.K. Edwards
,
Dan Peterson
,
Sandra W. Clifton
,
Amanda J. Thompson
,
Masahide Sasaki
,
Yutaka Suzuki
,
Kiyoshi Kikuchi
,
Shugo Watabe
,
Koichi Kawakami
,
Sumio Sugano
,
Greg Elgar
,
and
Stephen L. Johnson
Genome Res.
December 2003
13
:
2747
-
2753
;
Published in Advance
January 1, 2003
,
doi:
10.1101/gr.1691503
Abstract
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RESOURCE
:
Analysis of 5′-End Sequences of Chimpanzee cDNAs
Ryuichi Sakate
,
Naoki Osada
,
Munetomo Hida
,
Sumio Sugano
,
Ikuo Hayasaka
,
Naoko Shimohira
,
Shinsuke Yanagi
,
Yumiko Suto
,
Katsuyuki Hashimoto
,
and
Momoki Hirai
Genome Res.
May 1, 2003
13
:
1022
-
1026
;
doi:
10.1101/gr.783103
Abstract
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