Searching journal content for Stephen J. O'Brien in author.

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  1. Research: Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks
    • Marta Farré,
    • Jaebum Kim,
    • Anastasia A. Proskuryakova,
    • Yang Zhang,
    • Anastasia I. Kulemzina,
    • Qiye Li,
    • Yang Zhou,
    • Yingqi Xiong,
    • Jennifer L. Johnson,
    • Polina L. Perelman,
    • Warren E. Johnson,
    • Wesley C. Warren,
    • Anna V. Kukekova,
    • Guojie Zhang,
    • Stephen J. O'Brien,
    • Oliver A. Ryder,
    • Alexander S. Graphodatsky,
    • Jian Ma,
    • Harris A. Lewin,
    • and Denis M. Larkin
    Genome Res. April 2019 29: 576-589; Published in Advance February 13, 2019, doi:10.1101/gr.239863.118
  2. Research: Pangolin genomes and the evolution of mammalian scales and immunity
    • Siew Woh Choo,
    • Mike Rayko,
    • Tze King Tan,
    • Ranjeev Hari,
    • Aleksey Komissarov,
    • Wei Yee Wee,
    • Andrey A. Yurchenko,
    • Sergey Kliver,
    • Gaik Tamazian,
    • Agostinho Antunes,
    • Richard K. Wilson,
    • Wesley C. Warren,
    • Klaus-Peter Koepfli,
    • Patrick Minx,
    • Ksenia Krasheninnikova,
    • Antoinette Kotze,
    • Desire L. Dalton,
    • Elaine Vermaak,
    • Ian C. Paterson,
    • Pavel Dobrynin,
    • Frankie Thomas Sitam,
    • Jeffrine J. Rovie-Ryan,
    • Warren E. Johnson,
    • Aini Mohamed Yusoff,
    • Shu-Jin Luo,
    • Kayal Vizi Karuppannan,
    • Gang Fang,
    • Deyou Zheng,
    • Mark B. Gerstein,
    • Leonard Lipovich,
    • Stephen J. O'Brien,
    • and Guat Jah Wong
    Genome Res. October 2016 26: 1312-1322; Published in Advance August 10, 2016, doi:10.1101/gr.203521.115
  3. Method: Genome-wide characterization of centromeric satellites from multiple mammalian genomes
    • Can Alkan,
    • Maria Francesca Cardone,
    • Claudia Rita Catacchio,
    • Francesca Antonacci,
    • Stephen J. O'Brien,
    • Oliver A. Ryder,
    • Stefania Purgato,
    • Monica Zoli,
    • Giuliano Della Valle,
    • Evan E. Eichler,
    • and Mario Ventura
    Genome Res. January 2011 21: 137-145; Published in Advance November 16, 2010, doi:10.1101/gr.111278.110
  4. Commentary: Every genome sequence needs a good map
    • Harris A. Lewin,
    • Denis M. Larkin,
    • Joan Pontius,
    • and Stephen J. O'Brien
    Genome Res. November 2009 19: 1925-1928; Published in Advance July 13, 2009, doi:10.1101/gr.094557.109
  5. LETTER: An ~140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival
    • John C. Fyfe,
    • Marilyn Menotti-Raymond,
    • Victor A. David,
    • Lars Brichta,
    • Alejandro A. Schäffer,
    • Richa Agarwala,
    • William J. Murphy,
    • William J. Wedemeyer,
    • Brittany L. Gregory,
    • Bethany G. Buzzell,
    • Meghan C. Drummond,
    • Brunhilde Wirth,
    • and Stephen J. O'Brien
    Genome Res. September 2006 16: 1084-1090; Published in Advance August 9, 2006, doi:10.1101/gr.5268806
  6. ARTICLE: The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern
    • Francisco M. De La Vega,
    • Hadar Isaac,
    • Andrew Collins,
    • Charles R. Scafe,
    • Bjarni V. Halldórsson,
    • Xiaoping Su,
    • Ross A. Lippert,
    • Yu Wang,
    • Marion Laig-Webster,
    • Ryan T. Koehler,
    • Janet S. Ziegle,
    • Lewis T. Wogan,
    • Junko F. Stevens,
    • Kyle M. Leinen,
    • Sheri J. Olson,
    • Karl J. Guegler,
    • Xiaoqing You,
    • Lily H. Xu,
    • Heinz G. Hemken,
    • Francis Kalush,
    • Mitsuo Itakura,
    • Yi Zheng,
    • Guy de Thé,
    • Stephen J. O'Brien,
    • Andrew G. Clark,
    • Sorin Istrail,
    • Michael W. Hunkapiller,
    • Eugene G. Spier,
    • and Dennis A. Gilbert
    Genome Res. April 2005 15: 454-462; Published in Advance March 21, 2005, doi:10.1101/gr.3241705
    OPEN ACCESS ARTICLE
  7. LETTER: The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals
    • William J. Murphy,
    • Lutz Frönicke,
    • Stephen J. O'Brien,
    • and Roscoe Stanyon
    Genome Res. August 2003 13: 1880-1888; Published in Advance July 17, 2003, doi:10.1101/gr.1022303
  8. LETTER: Comparative Genome Organization of Human, Murine, and Feline MHC Class II Region
    • Naoya Yuhki,
    • Thomas Beck,
    • Robert M. Stephens,
    • Yoko Nishigaki,
    • Kymberly Newmann,
    • and Stephen J. O'Brien
    Genome Res. June 2003 13: 1169-1179; Published in Advance May 12, 2003, doi:10.1101/gr.976103
  9. LETTER: Genomic Microsatellites as Evolutionary Chronometers: A Test in Wild Cats
    • Carlos A. Driscoll,
    • Marilyn Menotti-Raymond,
    • George Nelson,
    • David Goldstein,
    • and Stephen J. O'Brien
    Genome Res. March 1, 2002 12: 414-423; doi:10.1101/gr.185702
  10. LETTER: A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping
    • William J. Murphy,
    • Shan Sun,
    • Zhang-qun Chen,
    • Naoya Yuhki,
    • Deborah Hirschmann,
    • Marilyn Menotti-Raymond,
    • and Stephen J. O'Brien
    Genome Res. May 1, 2000 10: 691-702; doi:10.1101/gr.10.5.691
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