Searching journal content for Shinichi Morishita in author.

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  1. Resource: CGC1, a new reference genome for Caenorhabditis elegans
    • Kazuki Ichikawa,
    • Massa J. Shoura,
    • Karen L. Artiles,
    • Dae-Eun Jeong,
    • Chie Owa,
    • Haruka Kobayashi,
    • Yoshihiko Suzuki,
    • Manami Kanamori,
    • Yu Toyoshima,
    • Yuichi Iino,
    • Ann E. Rougvie,
    • Lamia Wahba,
    • Andrew Z. Fire,
    • Erich M. Schwarz,
    • and Shinichi Morishita
    Genome Res. August 2025 35: 1902-1918; Published in Advance July 15, 2025, doi:10.1101/gr.280274.124
    OPEN ACCESS ARTICLE
  2. Method: Highly accurate assembly polishing with DeepPolisher
    • Mira Mastoras,
    • Mobin Asri,
    • Lucas Brambrink,
    • Prajna Hebbar,
    • Alexey Kolesnikov,
    • Daniel E. Cook,
    • Maria Nattestad,
    • Julian Lucas,
    • Taylor S. Won,
    • Pi-Chuan Chang,
    • Andrew Carroll,
    • Benedict Paten,
    • Kishwar Shafin,
    • and and the Human Pangenome Reference Consortium
    Genome Res. July 2025 35: 1595-1608; Published in Advance May 19, 2025, doi:10.1101/gr.280149.124
  3. Research: CTCF looping is established during gastrulation in medaka embryos
    • Ryohei Nakamura,
    • Yuichi Motai,
    • Masahiko Kumagai,
    • Candice L. Wike,
    • Haruyo Nishiyama,
    • Yoichiro Nakatani,
    • Neva C. Durand,
    • Kaori Kondo,
    • Takashi Kondo,
    • Tatsuya Tsukahara,
    • Atsuko Shimada,
    • Bradley R. Cairns,
    • Erez Lieberman Aiden,
    • Shinichi Morishita,
    • and Hiroyuki Takeda
    Genome Res. June 2021 31: 968-980; Published in Advance May 18, 2021, doi:10.1101/gr.269951.120
  4. Resource: Recompleting the Caenorhabditis elegans genome
    • Jun Yoshimura,
    • Kazuki Ichikawa,
    • Massa J. Shoura,
    • Karen L. Artiles,
    • Idan Gabdank,
    • Lamia Wahba,
    • Cheryl L. Smith,
    • Mark L. Edgley,
    • Ann E. Rougvie,
    • Andrew Z. Fire,
    • Shinichi Morishita,
    • and Erich M. Schwarz
    Genome Res. June 2019 29: 1009-1022; Published in Advance May 23, 2019, doi:10.1101/gr.244830.118
    OPEN ACCESS ARTICLE
  5. Resource: The transcription start site landscape of C. elegans
    • Taro Leo Saito,
    • Shin-ichi Hashimoto,
    • Sam Guoping Gu,
    • J. Jason Morton,
    • Michael Stadler,
    • Thomas Blumenthal,
    • Andrew Fire,
    • and Shinichi Morishita
    Genome Res. August 2013 23: 1348-1361; Published in Advance May 1, 2013, doi:10.1101/gr.151571.112
    OPEN ACCESS ARTICLE
  6. Research: Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
    • Wei Qu,
    • Shin-ichi Hashimoto,
    • Atsuko Shimada,
    • Yoichiro Nakatani,
    • Kazuki Ichikawa,
    • Taro L. Saito,
    • Katsumi Ogoshi,
    • Kouji Matsushima,
    • Yutaka Suzuki,
    • Sumio Sugano,
    • Hiroyuki Takeda,
    • and Shinichi Morishita
    Genome Res. August 2012 22: 1419-1425; Published in Advance June 11, 2012, doi:10.1101/gr.140236.112
    OPEN ACCESS ARTICLE
  7. Resource: Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing
    • Wei Qu,
    • Shin-ichi Hashimoto,
    • and Shinichi Morishita
    Genome Res. July 2009 19: 1309-1315; Published in Advance May 13, 2009, doi:10.1101/gr.089151.108
    OPEN ACCESS ARTICLE
  8. ARTICLE: Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates
    • Yoichiro Nakatani,
    • Hiroyuki Takeda,
    • Yuji Kohara,
    • and Shinichi Morishita
    Genome Res. September 2007 17: 1254-1265; Published in Advance July 25, 2007, doi:10.1101/gr.6316407
    OPEN ACCESS ARTICLE
  9. REPORT: Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
    • Yutaka Suzuki,
    • Tatsuhiko Tsunoda,
    • Jun Sese,
    • Hirotoshi Taira,
    • Junko Mizushima-Sugano,
    • Hiroko Hata,
    • Toshio Ota,
    • Takao Isogai,
    • Toshihiro Tanaka,
    • Yusuke Nakamura,
    • Akira Suyama,
    • Yoshiyuki Sakaki,
    • Shinichi Morishita,
    • Kousaku Okubo,
    • and Sumio Sugano
    Genome Res. May 1, 2001 11: 677-684; Published in Advance April 11, 2001, doi:10.1101/gr.164001
  10. RESOURCE: BodyMap: A Collection of 3′ ESTs for Analysis of Human Gene Expression Information
    • Shoko Kawamoto,
    • Junji Yoshii,
    • Katsuya Mizuno,
    • Kouichi Ito,
    • Yasuhide Miyamoto,
    • Tadashi Ohnishi,
    • Ryo Matoba,
    • Naohiro Hori,
    • Yuhiko Matsumoto,
    • Toshiyuki Okumura,
    • Yuko Nakao,
    • Hisae Yoshii,
    • Junko Arimoto,
    • Hiroko Ohashi,
    • Hiroko Nakanishi,
    • Ikko Ohno,
    • Jun Hashimoto,
    • Kota Shimizu,
    • Kazuhisa Maeda,
    • Hiroshi Kuriyama,
    • Koji Nishida,
    • Akiyo Shimizu-Matsumoto,
    • Wakako Adachi,
    • Reiko Ito,
    • Satoshi Kawasaki,
    • K.S. Chae,
    • Katsuji Murakawa,
    • Masahiro Yokoyama,
    • Atsushi Fukushima,
    • Teruyoshi Hishiki,
    • Akihiko Nakaya,
    • Jun Sese,
    • Norikazu Monma,
    • Hitoshi Nikaido,
    • Shinichi Morishita,
    • Kenichi Matsubara,
    • and Kousaku Okubo
    Genome Res. November 1, 2000 10: 1817-1827; doi:10.1101/gr.151500
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