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Shi Huang
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Research
:
Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling
Yichen Hu
,
Amnon Amir
,
Xiaochang Huang
,
Yan Li
,
Shi Huang
,
Elaine Wolfe
,
Sophie Weiss
,
Rob Knight
,
and
Zhenjiang Zech Xu
Genome Res.
June 2022
32
:
1112
-
1123
;
Published in Advance
June 10, 2022
,
doi:
10.1101/gr.276482.121
Abstract
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Method
:
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
George Armstrong
,
Kalen Cantrell
,
Shi Huang
,
Daniel McDonald
,
Niina Haiminen
,
Anna Paola Carrieri
,
Qiyun Zhu
,
Antonio Gonzalez
,
Imran McGrath
,
Kristen L. Beck
,
Daniel Hakim
,
Aki S. Havulinna
,
Guillaume Méric
,
Teemu Niiranen
,
Leo Lahti
,
Veikko Salomaa
,
Mohit Jain
,
Michael Inouye
,
Austin D. Swafford
,
Ho-Cheol Kim
,
Laxmi Parida
,
Yoshiki Vázquez-Baeza
,
and
Rob Knight
Genome Res.
November 2021
31
:
2131
-
2137
;
Published in Advance
September 3, 2021
,
doi:
10.1101/gr.275777.121
Abstract
Full Text
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Single-cell gene signature scoring
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Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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