Searching journal content for Sherman Weissman in author.

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  1. Research: One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin
    • Alexej Abyzov,
    • Livia Tomasini,
    • Bo Zhou,
    • Nikolaos Vasmatzis,
    • Gianfilippo Coppola,
    • Mariangela Amenduni,
    • Reenal Pattni,
    • Michael Wilson,
    • Mark Gerstein,
    • Sherman Weissman,
    • Alexander E. Urban,
    • and Flora M. Vaccarino
    Genome Res. April 2017 27: 512-523; Published in Advance February 24, 2017, doi:10.1101/gr.215517.116
  2. Research: Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells
    • Juan Carlos Rivera-Mulia,
    • Quinton Buckley,
    • Takayo Sasaki,
    • Jared Zimmerman,
    • Ruth A. Didier,
    • Kristopher Nazor,
    • Jeanne F. Loring,
    • Zheng Lian,
    • Sherman Weissman,
    • Allan J. Robins,
    • Thomas C. Schulz,
    • Laura Menendez,
    • Michael J. Kulik,
    • Stephen Dalton,
    • Haitham Gabr,
    • Tamer Kahveci,
    • and David M. Gilbert
    Genome Res. August 2015 25: 1091-1103; Published in Advance June 8, 2015, doi:10.1101/gr.187989.114
  3. Research: A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells
    • Alexandra E. Charos,
    • Brian D. Reed,
    • Debasish Raha,
    • Anna M. Szekely,
    • Sherman M. Weissman,
    • and Michael Snyder
    Genome Res. September 2012 22: 1668-1679; doi:10.1101/gr.127761.111
    OPEN ACCESS ARTICLE
  4. Methods: Genome-wide screen of promoter methylation identifies novel markers in melanoma
    • Yasuo Koga,
    • Mattia Pelizzola,
    • Elaine Cheng,
    • Michael Krauthammer,
    • Mario Sznol,
    • Stephan Ariyan,
    • Deepak Narayan,
    • Annette M. Molinaro,
    • Ruth Halaban,
    • and Sherman M. Weissman
    Genome Res. August 2009 19: 1462-1470; Published in Advance June 2, 2009, doi:10.1101/gr.091447.109
  5. LETTER: Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history
    • Philip M. Kim,
    • Hugo Y.K. Lam,
    • Alexander E. Urban,
    • Jan O. Korbel,
    • Jason Affourtit,
    • Fabian Grubert,
    • Xueying Chen,
    • Sherman Weissman,
    • Michael Snyder,
    • and Mark B. Gerstein
    Genome Res. December 2008 18: 1865-1874; Published in Advance October 8, 2008, doi:10.1101/gr.081422.108
    OPEN ACCESS ARTICLE
  6. Methods: MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment
    • Mattia Pelizzola,
    • Yasuo Koga,
    • Alexander Eckehart Urban,
    • Michael Krauthammer,
    • Sherman Weissman,
    • Ruth Halaban,
    • and Annette M. Molinaro
    Genome Res. October 2008 18: 1652-1659; Published in Advance September 2, 2008, doi:10.1101/gr.080721.108
  7. LETTER: A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation
    • Zheng Lian,
    • Alexander Karpikov,
    • Jin Lian,
    • Milind C. Mahajan,
    • Stephen Hartman,
    • Mark Gerstein,
    • Michael Snyder,
    • and Sherman M. Weissman
    Genome Res. August 2008 18: 1224-1237; Published in Advance May 16, 2008, doi:10.1101/gr.075804.107
  8. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  9. Methods: Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
    • Ghia M. Euskirchen,
    • Joel S. Rozowsky,
    • Chia-Lin Wei,
    • Wah Heng Lee,
    • Zhengdong D. Zhang,
    • Stephen Hartman,
    • Olof Emanuelsson,
    • Viktor Stolc,
    • Sherman Weissman,
    • Mark B. Gerstein,
    • Yijun Ruan,
    • and Michael Snyder
    Genome Res. June 2007 17: 898-909; doi:10.1101/gr.5583007
    OPEN ACCESS ARTICLE
  10. ARTICLE: The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
    • Joel S. Rozowsky,
    • Daniel Newburger,
    • Fred Sayward,
    • Jiaqian Wu,
    • Greg Jordan,
    • Jan O. Korbel,
    • Ugrappa Nagalakshmi,
    • Jin Yang,
    • Deyou Zheng,
    • Roderic Guigó,
    • Thomas R. Gingeras,
    • Sherman Weissman,
    • Perry Miller,
    • Michael Snyder,
    • and Mark B. Gerstein
    Genome Res. June 2007 17: 732-745; doi:10.1101/gr.5696007
    OPEN ACCESS ARTICLE
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