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Sherman M. Weissman
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13
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Research
:
One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin
Alexej Abyzov
,
Livia Tomasini
,
Bo Zhou
,
Nikolaos Vasmatzis
,
Gianfilippo Coppola
,
Mariangela Amenduni
,
Reenal Pattni
,
Michael Wilson
,
Mark Gerstein
,
Sherman Weissman
,
Alexander E. Urban
,
and
Flora M. Vaccarino
Genome Res.
April 2017
27
:
512
-
523
;
Published in Advance
February 24, 2017
,
doi:
10.1101/gr.215517.116
Abstract
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Research
:
Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells
Juan Carlos Rivera-Mulia
,
Quinton Buckley
,
Takayo Sasaki
,
Jared Zimmerman
,
Ruth A. Didier
,
Kristopher Nazor
,
Jeanne F. Loring
,
Zheng Lian
,
Sherman Weissman
,
Allan J. Robins
,
Thomas C. Schulz
,
Laura Menendez
,
Michael J. Kulik
,
Stephen Dalton
,
Haitham Gabr
,
Tamer Kahveci
,
and
David M. Gilbert
Genome Res.
August 2015
25
:
1091
-
1103
;
Published in Advance
June 8, 2015
,
doi:
10.1101/gr.187989.114
Abstract
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Research
:
A highly integrated and complex PPARGC1A transcription factor binding network in HepG2 cells
Alexandra E. Charos
,
Brian D. Reed
,
Debasish Raha
,
Anna M. Szekely
,
Sherman M. Weissman
,
and
Michael Snyder
Genome Res.
September 2012
22
:
1668
-
1679
;
doi:
10.1101/gr.127761.111
Abstract
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Methods
:
Genome-wide screen of promoter methylation identifies novel markers in melanoma
Yasuo Koga
,
Mattia Pelizzola
,
Elaine Cheng
,
Michael Krauthammer
,
Mario Sznol
,
Stephan Ariyan
,
Deepak Narayan
,
Annette M. Molinaro
,
Ruth Halaban
,
and
Sherman M. Weissman
Genome Res.
August 2009
19
:
1462
-
1470
;
Published in Advance
June 2, 2009
,
doi:
10.1101/gr.091447.109
Abstract
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LETTER
:
Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history
Philip M. Kim
,
Hugo Y.K. Lam
,
Alexander E. Urban
,
Jan O. Korbel
,
Jason Affourtit
,
Fabian Grubert
,
Xueying Chen
,
Sherman Weissman
,
Michael Snyder
,
and
Mark B. Gerstein
Genome Res.
December 2008
18
:
1865
-
1874
;
Published in Advance
October 8, 2008
,
doi:
10.1101/gr.081422.108
Abstract
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Methods
:
MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment
Mattia Pelizzola
,
Yasuo Koga
,
Alexander Eckehart Urban
,
Michael Krauthammer
,
Sherman Weissman
,
Ruth Halaban
,
and
Annette M. Molinaro
Genome Res.
October 2008
18
:
1652
-
1659
;
Published in Advance
September 2, 2008
,
doi:
10.1101/gr.080721.108
Abstract
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LETTER
:
A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3′ end RNA polyadenylation
Zheng Lian
,
Alexander Karpikov
,
Jin Lian
,
Milind C. Mahajan
,
Stephen Hartman
,
Mark Gerstein
,
Michael Snyder
,
and
Sherman M. Weissman
Genome Res.
August 2008
18
:
1224
-
1237
;
Published in Advance
May 16, 2008
,
doi:
10.1101/gr.075804.107
Abstract
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LETTER
:
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
David S. Johnson
,
Wei Li
,
D. Benjamin Gordon
,
Arindam Bhattacharjee
,
Bo Curry
,
Jayati Ghosh
,
Leonardo Brizuela
,
Jason S. Carroll
,
Myles Brown
,
Paul Flicek
,
Christoph M. Koch
,
Ian Dunham
,
Mark Bieda
,
Xiaoqin Xu
,
Peggy J. Farnham
,
Philipp Kapranov
,
David A. Nix
,
Thomas R. Gingeras
,
Xinmin Zhang
,
Heather Holster
,
Nan Jiang
,
Roland D. Green
,
Jun S. Song
,
Scott A. McCuine
,
Elizabeth Anton
,
Loan Nguyen
,
Nathan D. Trinklein
,
Zhen Ye
,
Keith Ching
,
David Hawkins
,
Bing Ren
,
Peter C. Scacheri
,
Joel Rozowsky
,
Alexander Karpikov
,
Ghia Euskirchen
,
Sherman Weissman
,
Mark Gerstein
,
Michael Snyder
,
Annie Yang
,
Zarmik Moqtaderi
,
Heather Hirsch
,
Hennady P. Shulha
,
Yutao Fu
,
Zhiping Weng
,
Kevin Struhl
,
Richard M. Myers
,
Jason D. Lieb
,
and
X. Shirley Liu
Genome Res.
March 2008
18
:
393
-
403
;
Published in Advance
February 7, 2008
,
doi:
10.1101/gr.7080508
Abstract
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Methods
:
Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies
Ghia M. Euskirchen
,
Joel S. Rozowsky
,
Chia-Lin Wei
,
Wah Heng Lee
,
Zhengdong D. Zhang
,
Stephen Hartman
,
Olof Emanuelsson
,
Viktor Stolc
,
Sherman Weissman
,
Mark B. Gerstein
,
Yijun Ruan
,
and
Michael Snyder
Genome Res.
June 2007
17
:
898
-
909
;
doi:
10.1101/gr.5583007
Abstract
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ARTICLE
:
The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
Joel S. Rozowsky
,
Daniel Newburger
,
Fred Sayward
,
Jiaqian Wu
,
Greg Jordan
,
Jan O. Korbel
,
Ugrappa Nagalakshmi
,
Jin Yang
,
Deyou Zheng
,
Roderic Guigó
,
Thomas R. Gingeras
,
Sherman Weissman
,
Perry Miller
,
Michael Snyder
,
and
Mark B. Gerstein
Genome Res.
June 2007
17
:
732
-
745
;
doi:
10.1101/gr.5696007
Abstract
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OPEN ACCESS ARTICLE
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