Searching journal content for Shan Yang in author.

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  1. Methods: Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
    • Kevin Judd McKernan,
    • Heather E. Peckham,
    • Gina L. Costa,
    • Stephen F. McLaughlin,
    • Yutao Fu,
    • Eric F. Tsung,
    • Christopher R. Clouser,
    • Cisyla Duncan,
    • Jeffrey K. Ichikawa,
    • Clarence C. Lee,
    • Zheng Zhang,
    • Swati S. Ranade,
    • Eileen T. Dimalanta,
    • Fiona C. Hyland,
    • Tanya D. Sokolsky,
    • Lei Zhang,
    • Andrew Sheridan,
    • Haoning Fu,
    • Cynthia L. Hendrickson,
    • Bin Li,
    • Lev Kotler,
    • Jeremy R. Stuart,
    • Joel A. Malek,
    • Jonathan M. Manning,
    • Alena A. Antipova,
    • Damon S. Perez,
    • Michael P. Moore,
    • Kathleen C. Hayashibara,
    • Michael R. Lyons,
    • Robert E. Beaudoin,
    • Brittany E. Coleman,
    • Michael W. Laptewicz,
    • Adam E. Sannicandro,
    • Michael D. Rhodes,
    • Rajesh K. Gottimukkala,
    • Shan Yang,
    • Vineet Bafna,
    • Ali Bashir,
    • Andrew MacBride,
    • Can Alkan,
    • Jeffrey M. Kidd,
    • Evan E. Eichler,
    • Martin G. Reese,
    • Francisco M. De La Vega,
    • and Alan P. Blanchard
    Genome Res. September 2009 19: 1527-1541; Published in Advance June 22, 2009, doi:10.1101/gr.091868.109
    OPEN ACCESS ARTICLE
  2. LETTER: Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
    • Laurie Gordon,
    • Shan Yang,
    • Mary Tran-Gyamfi,
    • Dan Baggott,
    • Mari Christensen,
    • Aaron Hamilton,
    • Richard Crooijmans,
    • Martien Groenen,
    • Susan Lucas,
    • Ivan Ovcharenko,
    • and Lisa Stubbs
    Genome Res. November 2007 17: 1603-1613; Published in Advance October 5, 2007, doi:10.1101/gr.6775107
  3. RESOURCE: A comprehensive catalog of human KRAB-associated zinc finger genes: Insights into the evolutionary history of a large family of transcriptional repressors
    • Stuart Huntley,
    • Daniel M. Baggott,
    • Aaron T. Hamilton,
    • Mary Tran-Gyamfi,
    • Shan Yang,
    • Joomyeong Kim,
    • Laurie Gordon,
    • Elbert Branscomb,
    • and Lisa Stubbs
    Genome Res. May 2006 16: 669-677; Published in Advance April 10, 2006, doi:10.1101/gr.4842106
  4. LETTER: Insertions and Deletions Are Male Biased Too: A Whole-Genome Analysis in Rodents
    • Kateryna D. Makova,
    • Shan Yang,
    • and Francesca Chiaromonte
    Genome Res. April 2004 14: 567-573; doi:10.1101/gr.1971104
  5. ARTICLE: Patterns of Insertions and Their Covariation With Substitutions in the Rat, Mouse, and Human Genomes
    • Shan Yang,
    • Arian F. Smit,
    • Scott Schwartz,
    • Francesca Chiaromonte,
    • Krishna M. Roskin,
    • David Haussler,
    • Webb Miller,
    • and Ross C. Hardison
    Genome Res. April 2004 14: 517-527; doi:10.1101/gr.1984404
  6. ARTICLE: Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution
    • Ross C. Hardison,
    • Krishna M. Roskin,
    • Shan Yang,
    • Mark Diekhans,
    • W. James Kent,
    • Ryan Weber,
    • Laura Elnitski,
    • Jia Li,
    • Michael O'Connor,
    • Diana Kolbe,
    • Scott Schwartz,
    • Terrence S. Furey,
    • Simon Whelan,
    • Nick Goldman,
    • Arian Smit,
    • Webb Miller,
    • Francesca Chiaromonte,
    • and David Haussler
    Genome Res. January 1, 2003 13: 13-26; doi:10.1101/gr.844103
  7. LETTER: Distinguishing Regulatory DNA From Neutral Sites
    • Laura Elnitski,
    • Ross C. Hardison,
    • Jia Li,
    • Shan Yang,
    • Diana Kolbe,
    • Pallavi Eswara,
    • Michael J. O'Connor,
    • Scott Schwartz,
    • Webb Miller,
    • and Francesca Chiaromonte
    Genome Res. January 1, 2003 13: 64-72; doi:10.1101/gr.817703
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