Searching journal content for Serafim Batzoglou in author.

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  1. Method: Read clouds uncover variation in complex regions of the human genome
    • Alex Bishara,
    • Yuling Liu,
    • Ziming Weng,
    • Dorna Kashef-Haghighi,
    • Daniel E. Newburger,
    • Robert West,
    • Arend Sidow,
    • and Serafim Batzoglou
    Genome Res. October 2015 25: 1570-1580; Published in Advance August 18, 2015, doi:10.1101/gr.191189.115
    OPEN ACCESS ARTICLE
  2. Method: Parente2: a fast and accurate method for detecting identity by descent
    • Jesse M. Rodriguez,
    • Sivan Bercovici,
    • Lin Huang,
    • Roy Frostig,
    • and Serafim Batzoglou
    Genome Res. February 2015 25: 280-289; Published in Advance October 1, 2014, doi:10.1101/gr.173641.114
    OPEN ACCESS ARTICLE
  3. Research: Genome evolution during progression to breast cancer
    • Daniel E. Newburger,
    • Dorna Kashef-Haghighi,
    • Ziming Weng,
    • Raheleh Salari,
    • Robert T. Sweeney,
    • Alayne L. Brunner,
    • Shirley X. Zhu,
    • Xiangqian Guo,
    • Sushama Varma,
    • Megan L. Troxell,
    • Robert B. West,
    • Serafim Batzoglou,
    • and Arend Sidow
    Genome Res. July 2013 23: 1097-1108; Published in Advance April 8, 2013, doi:10.1101/gr.151670.112
  4. Method: Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
    • Anshul Kundaje,
    • Sofia Kyriazopoulou-Panagiotopoulou,
    • Max Libbrecht,
    • Cheryl L. Smith,
    • Debasish Raha,
    • Elliott E. Winters,
    • Steven M. Johnson,
    • Michael Snyder,
    • Serafim Batzoglou,
    • and Arend Sidow
    Genome Res. September 2012 22: 1735-1747; doi:10.1101/gr.136366.111
    OPEN ACCESS ARTICLE
  5. Method: Linking disease associations with regulatory information in the human genome
    • Marc A. Schaub,
    • Alan P. Boyle,
    • Anshul Kundaje,
    • Serafim Batzoglou,
    • and Michael Snyder
    Genome Res. September 2012 22: 1748-1759; doi:10.1101/gr.136127.111
    OPEN ACCESS ARTICLE
  6. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  7. Letter: Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
    • David L. Goode,
    • Gregory M. Cooper,
    • Jeremy Schmutz,
    • Mark Dickson,
    • Eidelyn Gonzales,
    • Ming Tsai,
    • Kalpana Karra,
    • Eugene Davydov,
    • Serafim Batzoglou,
    • Richard M. Myers,
    • and Arend Sidow
    Genome Res. March 2010 20: 301-310; Published in Advance January 12, 2010, doi:10.1101/gr.102210.109
  8. RECOMB Special/Methods: Effect of genetic divergence in identifying ancestral origin using HAPAA
    • Andreas Sundquist,
    • Eugene Fratkin,
    • Chuong B. Do,
    • and Serafim Batzoglou
    Genome Res. April 2008 18: 676-682; Published in Advance March 18, 2008, doi:10.1101/gr.072850.107
    OPEN ACCESS ARTICLE
  9. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  10. Methods: Græmlin: General and robust alignment of multiple large interaction networks
    • Jason Flannick,
    • Antal Novak,
    • Balaji S. Srinivasan,
    • Harley H. McAdams,
    • and Serafim Batzoglou
    Genome Res. September 2006 16: 1169-1181; Published in Advance August 9, 2006, doi:10.1101/gr.5235706
    OPEN ACCESS ARTICLE
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