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Scott Kopetz
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Method
:
A deconvolution framework that uses single-cell sequencing plus a small benchmark data set for accurate analysis of cell type ratios in complex tissue samples
Shuai Guo
,
Xiaoqian Liu
,
Xuesen Cheng
,
Yujie Jiang
,
Shuangxi Ji
,
Qingnan Liang
,
Andrew Koval
,
Yumei Li
,
Leah A. Owen
,
Ivana K. Kim
,
Ana Aparicio
,
Sanghoon Lee
,
Anil K. Sood
,
Scott Kopetz
,
John Paul Shen
,
John N. Weinstein
,
Margaret M. DeAngelis
,
Rui Chen
,
and
Wenyi Wang
Genome Res.
January 2025
35
:
147
-
161
;
Published in Advance
November 25, 2024
,
doi:
10.1101/gr.278822.123
Abstract
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Research
:
Single-cell DNA sequencing reveals a late-dissemination model in metastatic colorectal cancer
Marco L. Leung
,
Alexander Davis
,
Ruli Gao
,
Anna Casasent
,
Yong Wang
,
Emi Sei
,
Eduardo Vilar
,
Dipen Maru
,
Scott Kopetz
,
and
Nicholas E. Navin
Genome Res.
August 2017
27
:
1287
-
1299
;
Published in Advance
May 25, 2017
,
doi:
10.1101/gr.209973.116
Abstract
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Research
:
CCAT2
, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer
Hui Ling
,
Riccardo Spizzo
,
Yaser Atlasi
,
Milena Nicoloso
,
Masayoshi Shimizu
,
Roxana S. Redis
,
Naohiro Nishida
,
Roberta Gafà
,
Jian Song
,
Zhiyi Guo
,
Cristina Ivan
,
Elisa Barbarotto
,
Ingrid De Vries
,
Xinna Zhang
,
Manuela Ferracin
,
Mike Churchman
,
Janneke F. van Galen
,
Berna H. Beverloo
,
Maryam Shariati
,
Franziska Haderk
,
Marcos R. Estecio
,
Guillermo Garcia-Manero
,
Gijs A. Patijn
,
David C. Gotley
,
Vikas Bhardwaj
,
Imad Shureiqi
,
Subrata Sen
,
Asha S. Multani
,
James Welsh
,
Ken Yamamoto
,
Itsuki Taniguchi
,
Min-Ae Song
,
Steven Gallinger
,
Graham Casey
,
Stephen N. Thibodeau
,
Loïc Le Marchand
,
Maarit Tiirikainen
,
Sendurai A. Mani
,
Wei Zhang
,
Ramana V. Davuluri
,
Koshi Mimori
,
Masaki Mori
,
Anieta M. Sieuwerts
,
John W.M. Martens
,
Ian Tomlinson
,
Massimo Negrini
,
Ioana Berindan-Neagoe
,
John A. Foekens
,
Stanley R. Hamilton
,
Giovanni Lanza
,
Scott Kopetz
,
Riccardo Fodde
,
and
George A. Calin
Genome Res.
September 2013
23
:
1446
-
1461
;
Published in Advance
June 24, 2013
,
doi:
10.1101/gr.152942.112
Abstract
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March 2026, 36 (3)
In This Issue
Single-cell gene signature scoring
Chromosome engineering in 8p syndrome
Convergent evolution in arid rodents
Short tandem repeat genotyping using long reads
Spectral component approach for recent population structure
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