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S. Cenk Sahinalp
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Displaying results 1-10 of
12
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Method
:
Secure phasing of private genomes in a trusted execution environment with TX-Phase
Natnatee Dokmai
,
Kaiyuan Zhu
,
S. Cenk Sahinalp
,
and
Hyunghoon Cho
Genome Res.
December 2025
35
:
2626
-
2636
;
Published in Advance
November 12, 2025
,
doi:
10.1101/gr.280558.125
Abstract
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OPEN ACCESS ARTICLE
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Method
:
Genotyping of selected germline adaptive immune system loci using short-read sequencing data
Michael K.B. Ford
,
Ananth Hari
,
Meredith Yeager
,
Lisa Mirabello
,
Stephen Chanock
,
Ibrahim Numanagić
,
COVNET Consortium
,
and
S. Cenk Sahinalp
Genome Res.
September 2025
35
:
2076
-
2086
;
Published in Advance
August 5, 2025
,
doi:
10.1101/gr.280314.124
Abstract
Full Text
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OPEN ACCESS ARTICLE
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Method
:
Single-cell methylation sequencing data reveal succinct metastatic migration histories and tumor progression models
Yuelin Liu
,
Xuan Cindy Li
,
Farid Rashidi Mehrabadi
,
Alejandro A. Schäffer
,
Drew Pratt
,
David R. Crawford
,
Salem Malikić
,
Erin K. Molloy
,
Vishaka Gopalan
,
Stephen M. Mount
,
Eytan Ruppin
,
Kenneth D. Aldape
,
and
S. Cenk Sahinalp
Genome Res.
July 2023
33
:
1089
-
1100
;
Published in Advance
June 14, 2023
,
doi:
10.1101/gr.277608.122
Abstract
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Method
:
An efficient genotyper and star-allele caller for pharmacogenomics
Ananth Hari
,
Qinghui Zhou
,
Nina Gonzaludo
,
John Harting
,
Stuart A. Scott
,
Xiang Qin
,
Steve Scherer
,
S. Cenk Sahinalp
,
and
Ibrahim Numanagić
Genome Res.
January 2023
33
:
61
-
70
;
Published in Advance
January 19, 2023
,
doi:
10.1101/gr.277075.122
Abstract
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Method
:
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data
Salem Malikic
,
Farid Rashidi Mehrabadi
,
Simone Ciccolella
,
Md. Khaledur Rahman
,
Camir Ricketts
,
Ehsan Haghshenas
,
Daniel Seidman
,
Faraz Hach
,
Iman Hajirasouliha
,
and
S. Cenk Sahinalp
Genome Res.
November 2019
29
:
1860
-
1877
;
Published in Advance
October 18, 2019
,
doi:
10.1101/gr.234435.118
Abstract
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OPEN ACCESS ARTICLE
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Method
:
HIT'nDRIVE: patient-specific multidriver gene prioritization for precision oncology
Raunak Shrestha
,
Ermin Hodzic
,
Thomas Sauerwald
,
Phuong Dao
,
Kendric Wang
,
Jake Yeung
,
Shawn Anderson
,
Fabio Vandin
,
Gholamreza Haffari
,
Colin C. Collins
,
and
S. Cenk Sahinalp
Genome Res.
September 2017
27
:
1573
-
1588
;
Published in Advance
July 18, 2017
,
doi:
10.1101/gr.221218.117
Abstract
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Method
:
nFuse: Discovery of complex genomic rearrangements in cancer using high-throughput sequencing
Andrew McPherson
,
Chunxiao Wu
,
Alexander W. Wyatt
,
Sohrab Shah
,
Colin Collins
,
and
S. Cenk Sahinalp
Genome Res.
November 2012
22
:
2250
-
2261
;
Published in Advance
June 28, 2012
,
doi:
10.1101/gr.136572.111
Abstract
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Resource
:
Simultaneous structural variation discovery among multiple paired-end sequenced genomes
Fereydoun Hormozdiari
,
Iman Hajirasouliha
,
Andrew McPherson
,
Evan E. Eichler
,
and
S. Cenk Sahinalp
Genome Res.
December 2011
21
:
2203
-
2212
;
Published in Advance
November 2, 2011
,
doi:
10.1101/gr.120501.111
Abstract
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Research
:
Alu
repeat discovery and characterization within human genomes
Fereydoun Hormozdiari
,
Can Alkan
,
Mario Ventura
,
Iman Hajirasouliha
,
Maika Malig
,
Faraz Hach
,
Deniz Yorukoglu
,
Phuong Dao
,
Marzieh Bakhshi
,
S. Cenk Sahinalp
,
and
Evan E. Eichler
Genome Res.
June 2011
21
:
840
-
849
;
Published in Advance
December 3, 2010
,
doi:
10.1101/gr.115956.110
Abstract
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The 1000 Genomes Project
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Methods
:
Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes
Fereydoun Hormozdiari
,
Can Alkan
,
Evan E. Eichler
,
and
S. Cenk Sahinalp
Genome Res.
July 2009
19
:
1270
-
1278
;
Published in Advance
May 15, 2009
,
doi:
10.1101/gr.088633.108
Abstract
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