Searching journal content for Ryan M. McDaniell in author.

Displaying results 1-3 of 3
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  1. Research: Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells
    • Bum-Kyu Lee,
    • Akshay A. Bhinge,
    • Anna Battenhouse,
    • Ryan M. McDaniell,
    • Zheng Liu,
    • Lingyun Song,
    • Yunyun Ni,
    • Ewan Birney,
    • Jason D. Lieb,
    • Terrence S. Furey,
    • Gregory E. Crawford,
    • and Vishwanath R. Iyer
    Genome Res. January 2012 22: 9-24; Published in Advance November 16, 2011, doi:10.1101/gr.127597.111
    OPEN ACCESS ARTICLE
  2. Resource: Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • Lingyun Song,
    • Zhancheng Zhang,
    • Linda L. Grasfeder,
    • Alan P. Boyle,
    • Paul G. Giresi,
    • Bum-Kyu Lee,
    • Nathan C. Sheffield,
    • Stefan Gräf,
    • Mikael Huss,
    • Damian Keefe,
    • Zheng Liu,
    • Darin London,
    • Ryan M. McDaniell,
    • Yoichiro Shibata,
    • Kimberly A. Showers,
    • Jeremy M. Simon,
    • Teresa Vales,
    • Tianyuan Wang,
    • Deborah Winter,
    • Zhuzhu Zhang,
    • Neil D. Clarke,
    • Ewan Birney,
    • Vishwanath R. Iyer,
    • Gregory E. Crawford,
    • Jason D. Lieb,
    • and Terrence S. Furey
    Genome Res. October 2011 21: 1757-1767; Published in Advance July 12, 2011, doi:10.1101/gr.121541.111
    OPEN ACCESS ARTICLE
  3. Methods: FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
    • Paul G. Giresi,
    • Jonghwan Kim,
    • Ryan M. McDaniell,
    • Vishwanath R. Iyer,
    • and Jason D. Lieb
    Genome Res. June 2007 17: 877-885; Published in Advance December 19, 2006, doi:10.1101/gr.5533506
    OPEN ACCESS ARTICLE
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