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Ryan Lister
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Displaying results 1-9 of
9
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Corrigendum
:
Corrigendum: Characterization of DNA methylation reader proteins in
Arabidopsis thaliana
Jonathan Cahn
,
James P.B. Lloyd
,
Ino D. Karemaker
,
Pascal W.T.C. Jansen
,
Jahnvi Pflueger
,
Owen Duncan
,
Jakob Petereit
,
Ozren Bogdanovic
,
A. Harvey Millar
,
Michiel Vermeulen
,
and
Ryan Lister
Genome Res.
June 2025
35
:
1472-1
;
doi:
10.1101/gr.280860.125
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Research
:
Characterization of DNA methylation reader proteins in
Arabidopsis thaliana
Jonathan Cahn
,
James P.B. Lloyd
,
Ino D. Karemaker
,
Pascal W.T.C. Jansen
,
Jahnvi Pflueger
,
Owen Duncan
,
Jakob Petereit
,
Ozren Bogdanovic
,
A. Harvey Millar
,
Michiel Vermeulen
,
and
Ryan Lister
Genome Res.
December 2024
34
:
2229
-
2243
;
Published in Advance
December 4, 2024
,
doi:
10.1101/gr.279379.124
Abstract
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Research
:
Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family
Alex de Mendoza
,
Jahnvi Pflueger
,
and
Ryan Lister
Genome Res.
August 2019
29
:
1277
-
1286
;
Published in Advance
June 25, 2019
,
doi:
10.1101/gr.243774.118
Abstract
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Method
:
A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs
Christian Pflueger
,
Dennis Tan
,
Tessa Swain
,
Trung Nguyen
,
Jahnvi Pflueger
,
Christian Nefzger
,
Jose M. Polo
,
Ethan Ford
,
and
Ryan Lister
Genome Res.
August 2018
28
:
1193
-
1206
;
Published in Advance
June 15, 2018
,
doi:
10.1101/gr.233049.117
Abstract
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Research
:
DNA methylation profiles of diverse
Brachypodium distachyon
align with underlying genetic diversity
Steven R. Eichten
,
Tim Stuart
,
Akanksha Srivastava
,
Ryan Lister
,
and
Justin O. Borevitz
Genome Res.
November 2016
26
:
1520
-
1531
;
Published in Advance
September 9, 2016
,
doi:
10.1101/gr.205468.116
Abstract
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Research
:
Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways
Weishi Yu
,
Carl McIntosh
,
Ryan Lister
,
Iris Zhu
,
Yixing Han
,
Jianke Ren
,
David Landsman
,
Eunice Lee
,
Victorino Briones
,
Minoru Terashima
,
Robert Leighty
,
Joseph R. Ecker
,
and
Kathrin Muegge
Genome Res.
October 2014
24
:
1613
-
1623
;
Published in Advance
August 28, 2014
,
doi:
10.1101/gr.172015.114
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Research
:
Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of
cis
-mediated silencing in somatic cells
Timothy J. Looney
,
Li Zhang
,
Chih-Hsin Chen
,
Jae Hyun Lee
,
Sheila Chari
,
Frank Fuxiang Mao
,
Mattia Pelizzola
,
Lu Zhang
,
Ryan Lister
,
Samuel W. Baker
,
Croydon J. Fernandes
,
Jedidiah Gaetz
,
Kara M. Foshay
,
Kayla L. Clift
,
Zhenyu Zhang
,
Wei-Qiang Li
,
Eric J. Vallender
,
Ulrich Wagner
,
Jane Yuxia Qin
,
Katelyn J. Michelini
,
Branimir Bugarija
,
Donghyun Park
,
Emmanuel Aryee
,
Thomas Stricker
,
Jie Zhou
,
Kevin P. White
,
Bing Ren
,
Gary P. Schroth
,
Joseph R. Ecker
,
Andy Peng Xiang
,
and
Bruce T. Lahn
Genome Res.
February 2014
24
:
267
-
280
;
Published in Advance
December 5, 2013
,
doi:
10.1101/gr.143891.112
Abstract
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Research
:
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
Gary C. Hon
,
R. David Hawkins
,
Otavia L. Caballero
,
Christine Lo
,
Ryan Lister
,
Mattia Pelizzola
,
Armand Valsesia
,
Zhen Ye
,
Samantha Kuan
,
Lee E. Edsall
,
Anamaria Aranha Camargo
,
Brian J. Stevenson
,
Joseph R. Ecker
,
Vineet Bafna
,
Robert L. Strausberg
,
Andrew J. Simpson
,
and
Bing Ren
Genome Res.
February 2012
22
:
246
-
258
;
Published in Advance
December 7, 2011
,
doi:
10.1101/gr.125872.111
Abstract
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Next-Generation DNA Sequencing/Review
:
Finding the fifth base: Genome-wide sequencing of cytosine methylation
Ryan Lister
and
Joseph R. Ecker
Genome Res.
June 2009
19
:
959
-
966
;
Published in Advance
March 9, 2009
,
doi:
10.1101/gr.083451.108
Abstract
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