Searching journal content for Ryan Lister in author.

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  1. Corrigendum: Corrigendum: Characterization of DNA methylation reader proteins in Arabidopsis thaliana
    • Jonathan Cahn,
    • James P.B. Lloyd,
    • Ino D. Karemaker,
    • Pascal W.T.C. Jansen,
    • Jahnvi Pflueger,
    • Owen Duncan,
    • Jakob Petereit,
    • Ozren Bogdanovic,
    • A. Harvey Millar,
    • Michiel Vermeulen,
    • and Ryan Lister
    Genome Res. June 2025 35: 1472-1; doi:10.1101/gr.280860.125
    OPEN ACCESS ARTICLE
  2. Research: Characterization of DNA methylation reader proteins in Arabidopsis thaliana
    • Jonathan Cahn,
    • James P.B. Lloyd,
    • Ino D. Karemaker,
    • Pascal W.T.C. Jansen,
    • Jahnvi Pflueger,
    • Owen Duncan,
    • Jakob Petereit,
    • Ozren Bogdanovic,
    • A. Harvey Millar,
    • Michiel Vermeulen,
    • and Ryan Lister
    Genome Res. December 2024 34: 2229-2243; Published in Advance December 4, 2024, doi:10.1101/gr.279379.124
  3. Research: Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family
    • Alex de Mendoza,
    • Jahnvi Pflueger,
    • and Ryan Lister
    Genome Res. August 2019 29: 1277-1286; Published in Advance June 25, 2019, doi:10.1101/gr.243774.118
  4. Method: A modular dCas9-SunTag DNMT3A epigenome editing system overcomes pervasive off-target activity of direct fusion dCas9-DNMT3A constructs
    • Christian Pflueger,
    • Dennis Tan,
    • Tessa Swain,
    • Trung Nguyen,
    • Jahnvi Pflueger,
    • Christian Nefzger,
    • Jose M. Polo,
    • Ethan Ford,
    • and Ryan Lister
    Genome Res. August 2018 28: 1193-1206; Published in Advance June 15, 2018, doi:10.1101/gr.233049.117
  5. Research: DNA methylation profiles of diverse Brachypodium distachyon align with underlying genetic diversity
    • Steven R. Eichten,
    • Tim Stuart,
    • Akanksha Srivastava,
    • Ryan Lister,
    • and Justin O. Borevitz
    Genome Res. November 2016 26: 1520-1531; Published in Advance September 9, 2016, doi:10.1101/gr.205468.116
    OPEN ACCESS ARTICLE
  6. Research: Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways
    • Weishi Yu,
    • Carl McIntosh,
    • Ryan Lister,
    • Iris Zhu,
    • Yixing Han,
    • Jianke Ren,
    • David Landsman,
    • Eunice Lee,
    • Victorino Briones,
    • Minoru Terashima,
    • Robert Leighty,
    • Joseph R. Ecker,
    • and Kathrin Muegge
    Genome Res. October 2014 24: 1613-1623; Published in Advance August 28, 2014, doi:10.1101/gr.172015.114
  7. Research: Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells
    • Timothy J. Looney,
    • Li Zhang,
    • Chih-Hsin Chen,
    • Jae Hyun Lee,
    • Sheila Chari,
    • Frank Fuxiang Mao,
    • Mattia Pelizzola,
    • Lu Zhang,
    • Ryan Lister,
    • Samuel W. Baker,
    • Croydon J. Fernandes,
    • Jedidiah Gaetz,
    • Kara M. Foshay,
    • Kayla L. Clift,
    • Zhenyu Zhang,
    • Wei-Qiang Li,
    • Eric J. Vallender,
    • Ulrich Wagner,
    • Jane Yuxia Qin,
    • Katelyn J. Michelini,
    • Branimir Bugarija,
    • Donghyun Park,
    • Emmanuel Aryee,
    • Thomas Stricker,
    • Jie Zhou,
    • Kevin P. White,
    • Bing Ren,
    • Gary P. Schroth,
    • Joseph R. Ecker,
    • Andy Peng Xiang,
    • and Bruce T. Lahn
    Genome Res. February 2014 24: 267-280; Published in Advance December 5, 2013, doi:10.1101/gr.143891.112
  8. Research: Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
    • Gary C. Hon,
    • R. David Hawkins,
    • Otavia L. Caballero,
    • Christine Lo,
    • Ryan Lister,
    • Mattia Pelizzola,
    • Armand Valsesia,
    • Zhen Ye,
    • Samantha Kuan,
    • Lee E. Edsall,
    • Anamaria Aranha Camargo,
    • Brian J. Stevenson,
    • Joseph R. Ecker,
    • Vineet Bafna,
    • Robert L. Strausberg,
    • Andrew J. Simpson,
    • and Bing Ren
    Genome Res. February 2012 22: 246-258; Published in Advance December 7, 2011, doi:10.1101/gr.125872.111
  9. Next-Generation DNA Sequencing/Review: Finding the fifth base: Genome-wide sequencing of cytosine methylation
    • Ryan Lister and
    • Joseph R. Ecker
    Genome Res. June 2009 19: 959-966; Published in Advance March 9, 2009, doi:10.1101/gr.083451.108
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