Searching journal content for Ross Hardison in author.

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  1. Resource: Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes
    • Guanjue Xiang,
    • Xi He,
    • Belinda M. Giardine,
    • Kathryn J. Isaac,
    • Dylan J. Taylor,
    • Rajiv C. McCoy,
    • Camden Jansen,
    • Cheryl A. Keller,
    • Alexander Q. Wixom,
    • April Cockburn,
    • Amber Miller,
    • Qian Qi,
    • Yanghua He,
    • Yichao Li,
    • Jens Lichtenberg,
    • Elisabeth F. Heuston,
    • Stacie M. Anderson,
    • Jing Luan,
    • Marit W. Vermunt,
    • Feng Yue,
    • Michael E.G. Sauria,
    • Michael C. Schatz,
    • James Taylor,
    • Berthold Göttgens,
    • Jim R. Hughes,
    • Douglas R. Higgs,
    • Mitchell J. Weiss,
    • Yong Cheng,
    • Gerd A. Blobel,
    • David M. Bodine,
    • Yu Zhang,
    • Qunhua Li,
    • Shaun Mahony,
    • and Ross C. Hardison
    Genome Res. July 2024 34: 1089-1105; Published in Advance July 1, 2024, doi:10.1101/gr.277950.123
    OPEN ACCESS ARTICLE
  2. Method: Domain-adaptive neural networks improve cross-species prediction of transcription factor binding
    • Kelly Cochran,
    • Divyanshi Srivastava,
    • Avanti Shrikumar,
    • Akshay Balsubramani,
    • Ross C. Hardison,
    • Anshul Kundaje,
    • and Shaun Mahony
    Genome Res. March 2022 32: 512-523; Published in Advance January 18, 2022, doi:10.1101/gr.275394.121
  3. Resource: An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
    • Guanjue Xiang,
    • Cheryl A. Keller,
    • Elisabeth Heuston,
    • Belinda M. Giardine,
    • Lin An,
    • Alexander Q. Wixom,
    • Amber Miller,
    • April Cockburn,
    • Michael E.G. Sauria,
    • Kathryn Weaver,
    • Jens Lichtenberg,
    • Berthold Göttgens,
    • Qunhua Li,
    • David Bodine,
    • Shaun Mahony,
    • James Taylor,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • Yong Cheng,
    • Feng Yue,
    • Jim Hughes,
    • Douglas R. Higgs,
    • Yu Zhang,
    • and Ross C. Hardison
    Genome Res. March 2020 30: 472-484; Published in Advance March 4, 2020, doi:10.1101/gr.255760.119
    OPEN ACCESS ARTICLE
  4. Method: HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
    • Tao Yang,
    • Feipeng Zhang,
    • Galip Gürkan Yardımcı,
    • Fan Song,
    • Ross C. Hardison,
    • William Stafford Noble,
    • Feng Yue,
    • and Qunhua Li
    Genome Res. November 2017 27: 1939-1949; Published in Advance August 30, 2017, doi:10.1101/gr.220640.117
  5. Research: Genome accessibility is widely preserved and locally modulated during mitosis
    • Chris C.-S. Hsiung,
    • Christapher S. Morrissey,
    • Maheshi Udugama,
    • Christopher L. Frank,
    • Cheryl A. Keller,
    • Songjoon Baek,
    • Belinda Giardine,
    • Gregory E. Crawford,
    • Myong-Hee Sung,
    • Ross C. Hardison,
    • and Gerd A. Blobel
    Genome Res. February 2015 25: 213-225; Published in Advance November 4, 2014, doi:10.1101/gr.180646.114
  6. Research: Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
    • Maxim Pimkin,
    • Andrew V. Kossenkov,
    • Tejaswini Mishra,
    • Christapher S. Morrissey,
    • Weisheng Wu,
    • Cheryl A. Keller,
    • Gerd A. Blobel,
    • Dongwon Lee,
    • Michael A. Beer,
    • Ross C. Hardison,
    • and Mitchell J. Weiss
    Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
    OPEN ACCESS ARTICLE
  7. Research: Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
    • Weisheng Wu,
    • Christapher S. Morrissey,
    • Cheryl A. Keller,
    • Tejaswini Mishra,
    • Maxim Pimkin,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
    OPEN ACCESS ARTICLE
  8. Resource: Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps
    • Ali Mortazavi,
    • Shirley Pepke,
    • Camden Jansen,
    • Georgi K. Marinov,
    • Jason Ernst,
    • Manolis Kellis,
    • Ross C. Hardison,
    • Richard M. Myers,
    • and Barbara J. Wold
    Genome Res. December 2013 23: 2136-2148; Published in Advance October 29, 2013, doi:10.1101/gr.158261.113
    OPEN ACCESS ARTICLE
  9. Review: What fraction of the human genome is functional?
    • Chris P. Ponting and
    • Ross C. Hardison
    Genome Res. November 2011 21: 1769-1776; Published in Advance August 29, 2011, doi:10.1101/gr.116814.110
    OPEN ACCESS ARTICLE
  10. Research: Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
    • Weisheng Wu,
    • Yong Cheng,
    • Cheryl A. Keller,
    • Jason Ernst,
    • Swathi Ashok Kumar,
    • Tejaswini Mishra,
    • Christapher Morrissey,
    • Christine M. Dorman,
    • Kuan-Bei Chen,
    • Daniela Drautz,
    • Belinda Giardine,
    • Yoichiro Shibata,
    • Lingyun Song,
    • Max Pimkin,
    • Gregory E. Crawford,
    • Terrence S. Furey,
    • Manolis Kellis,
    • Webb Miller,
    • James Taylor,
    • Stephan C. Schuster,
    • Yu Zhang,
    • Francesca Chiaromonte,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. October 2011 21: 1659-1671; Published in Advance July 27, 2011, doi:10.1101/gr.125088.111
    OPEN ACCESS ARTICLE
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