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Method: Efficient minimizer orders for large values of k using minimum decycling sets

Genome Res. July 2023 33: 1154-1161; Published in Advance August 9, 2023, doi:10.1101/gr.277644.123

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Research: Enhancer methylation dynamics contribute to cancer plasticity and patient mortality

Genome Res. May 2016 26: 601-611; Published in Advance February 23, 2016, doi:10.1101/gr.197194.115

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Research: A novel candidate cis-regulatory motif pair in the promoters of germline and oogenesis genes in C. elegans

Genome Res. January 2012 22: 76-83; Published in Advance September 19, 2011, doi:10.1101/gr.115626.110

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RESOURCE: Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets

Genome Res. July 2008 18: 1180-1189; Published in Advance April 14, 2008, doi:10.1101/gr.076117.108

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Methods: Refinement and expansion of signaling pathways: The osmotic response network in yeast

Genome Res. March 2007 17: 358-367; Published in Advance January 31, 2007, doi:10.1101/gr.5750507

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Methods: A Non-EST-Based Method for Exon-Skipping Prediction

Genome Res. August 2004 14: 1617-1623; doi:10.1101/gr.2572604

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LETTER: A Global View of the Selection Forces in the Evolution of Yeast Cis-Regulation

Genome Res. May 2004 14: 829-834; doi:10.1101/gr.2064404

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ARTICLE: Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells

Genome Res. May 1, 2003 13: 773-780; doi:10.1101/gr.947203

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