Searching journal content for Roland D. Green in author.

Displaying results 1-10 of 14
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  1. LETTER: Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
    • Yong Cheng,
    • David C. King,
    • Louis C. Dore,
    • Xinmin Zhang,
    • Yuepin Zhou,
    • Ying Zhang,
    • Christine Dorman,
    • Demesew Abebe,
    • Swathi A. Kumar,
    • Francesca Chiaromonte,
    • Webb Miller,
    • Roland D. Green,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2008 18: 1896-1905; Published in Advance September 25, 2008, doi:10.1101/gr.083089.108
    OPEN ACCESS ARTICLE
  2. Methods: Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification
    • Bo Wen,
    • Hao Wu,
    • Hans Bjornsson,
    • Roland D. Green,
    • Rafael Irizarry,
    • and Andrew P. Feinberg
    Genome Res. November 2008 18: 1806-1813; Published in Advance September 16, 2008, doi:10.1101/gr.067587.107
    OPEN ACCESS ARTICLE
  3. Methods: SNP-specific array-based allele-specific expression analysis
    • Hans T. Bjornsson,
    • Thomas J. Albert,
    • Christine M. Ladd-Acosta,
    • Roland D. Green,
    • Michael A. Rongione,
    • Christina M. Middle,
    • Rafael A. Irizarry,
    • Karl W. Broman,
    • and Andrew P. Feinberg
    Genome Res. May 2008 18: 771-779; Published in Advance March 27, 2008, doi:10.1101/gr.073254.107
  4. LETTER: Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
    • Vitalina M. Komashko,
    • Luis G. Acevedo,
    • Sharon L. Squazzo,
    • Sushma S. Iyengar,
    • Alina Rabinovich,
    • Henriette O’Geen,
    • Roland Green,
    • and Peggy J. Farnham
    Genome Res. April 2008 18: 521-532; Published in Advance March 17, 2008, doi:10.1101/gr.074609.107
  5. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  6. LETTER: Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
    • Leah O. Barrera,
    • Zirong Li,
    • Andrew D. Smith,
    • Karen C. Arden,
    • Webster K. Cavenee,
    • Michael Q. Zhang,
    • Roland D. Green,
    • and Bing Ren
    Genome Res. January 2008 18: 46-59; Published in Advance November 27, 2007, doi:10.1101/gr.6654808
  7. ARTICLE: A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
    • Xiaoqin Xu,
    • Mark Bieda,
    • Victor X. Jin,
    • Alina Rabinovich,
    • Mathew J. Oberley,
    • Roland Green,
    • and Peggy J. Farnham
    Genome Res. November 2007 17: 1550-1561; Published in Advance October 1, 2007, doi:10.1101/gr.6783507
  8. LETTER: Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches
    • Victor X. Jin,
    • Henriette O’Geen,
    • Sushma Iyengar,
    • Roland Green,
    • and Peggy J. Farnham
    Genome Res. June 2007 17: 807-817; doi:10.1101/gr.6006107
    OPEN ACCESS ARTICLE
  9. Methods: A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data—A case study using E2F1
    • Victor X. Jin,
    • Alina Rabinovich,
    • Sharon L. Squazzo,
    • Roland Green,
    • and Peggy J. Farnham
    Genome Res. December 2006 16: 1585-1595; Published in Advance October 19, 2006, doi:10.1101/gr.5520206
  10. Methods: Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
    • Josée Dostie,
    • Todd A. Richmond,
    • Ramy A. Arnaout,
    • Rebecca R. Selzer,
    • William L. Lee,
    • Tracey A. Honan,
    • Eric D. Rubio,
    • Anton Krumm,
    • Justin Lamb,
    • Chad Nusbaum,
    • Roland D. Green,
    • and Job Dekker
    Genome Res. October 2006 16: 1299-1309; Published in Advance September 5, 2006, doi:10.1101/gr.5571506
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