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Roland D. Green
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Displaying results 1-10 of
14
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LETTER
:
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif
Yong Cheng
,
David C. King
,
Louis C. Dore
,
Xinmin Zhang
,
Yuepin Zhou
,
Ying Zhang
,
Christine Dorman
,
Demesew Abebe
,
Swathi A. Kumar
,
Francesca Chiaromonte
,
Webb Miller
,
Roland D. Green
,
Mitchell J. Weiss
,
and
Ross C. Hardison
Genome Res.
December 2008
18
:
1896
-
1905
;
Published in Advance
September 25, 2008
,
doi:
10.1101/gr.083089.108
Abstract
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Methods
:
Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification
Bo Wen
,
Hao Wu
,
Hans Bjornsson
,
Roland D. Green
,
Rafael Irizarry
,
and
Andrew P. Feinberg
Genome Res.
November 2008
18
:
1806
-
1813
;
Published in Advance
September 16, 2008
,
doi:
10.1101/gr.067587.107
Abstract
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Methods
:
SNP-specific array-based allele-specific expression analysis
Hans T. Bjornsson
,
Thomas J. Albert
,
Christine M. Ladd-Acosta
,
Roland D. Green
,
Michael A. Rongione
,
Christina M. Middle
,
Rafael A. Irizarry
,
Karl W. Broman
,
and
Andrew P. Feinberg
Genome Res.
May 2008
18
:
771
-
779
;
Published in Advance
March 27, 2008
,
doi:
10.1101/gr.073254.107
Abstract
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LETTER
:
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
Vitalina M. Komashko
,
Luis G. Acevedo
,
Sharon L. Squazzo
,
Sushma S. Iyengar
,
Alina Rabinovich
,
Henriette O’Geen
,
Roland Green
,
and
Peggy J. Farnham
Genome Res.
April 2008
18
:
521
-
532
;
Published in Advance
March 17, 2008
,
doi:
10.1101/gr.074609.107
Abstract
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LETTER
:
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
David S. Johnson
,
Wei Li
,
D. Benjamin Gordon
,
Arindam Bhattacharjee
,
Bo Curry
,
Jayati Ghosh
,
Leonardo Brizuela
,
Jason S. Carroll
,
Myles Brown
,
Paul Flicek
,
Christoph M. Koch
,
Ian Dunham
,
Mark Bieda
,
Xiaoqin Xu
,
Peggy J. Farnham
,
Philipp Kapranov
,
David A. Nix
,
Thomas R. Gingeras
,
Xinmin Zhang
,
Heather Holster
,
Nan Jiang
,
Roland D. Green
,
Jun S. Song
,
Scott A. McCuine
,
Elizabeth Anton
,
Loan Nguyen
,
Nathan D. Trinklein
,
Zhen Ye
,
Keith Ching
,
David Hawkins
,
Bing Ren
,
Peter C. Scacheri
,
Joel Rozowsky
,
Alexander Karpikov
,
Ghia Euskirchen
,
Sherman Weissman
,
Mark Gerstein
,
Michael Snyder
,
Annie Yang
,
Zarmik Moqtaderi
,
Heather Hirsch
,
Hennady P. Shulha
,
Yutao Fu
,
Zhiping Weng
,
Kevin Struhl
,
Richard M. Myers
,
Jason D. Lieb
,
and
X. Shirley Liu
Genome Res.
March 2008
18
:
393
-
403
;
Published in Advance
February 7, 2008
,
doi:
10.1101/gr.7080508
Abstract
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LETTER
:
Genome-wide mapping and analysis of active promoters in mouse embryonic stem cells and adult organs
Leah O. Barrera
,
Zirong Li
,
Andrew D. Smith
,
Karen C. Arden
,
Webster K. Cavenee
,
Michael Q. Zhang
,
Roland D. Green
,
and
Bing Ren
Genome Res.
January 2008
18
:
46
-
59
;
Published in Advance
November 27, 2007
,
doi:
10.1101/gr.6654808
Abstract
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ARTICLE
:
A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
Xiaoqin Xu
,
Mark Bieda
,
Victor X. Jin
,
Alina Rabinovich
,
Mathew J. Oberley
,
Roland Green
,
and
Peggy J. Farnham
Genome Res.
November 2007
17
:
1550
-
1561
;
Published in Advance
October 1, 2007
,
doi:
10.1101/gr.6783507
Abstract
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LETTER
:
Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches
Victor X. Jin
,
Henriette O’Geen
,
Sushma Iyengar
,
Roland Green
,
and
Peggy J. Farnham
Genome Res.
June 2007
17
:
807
-
817
;
doi:
10.1101/gr.6006107
Abstract
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Methods
:
A computational genomics approach to identify
cis
-regulatory modules from chromatin immunoprecipitation microarray data—A case study using E2F1
Victor X. Jin
,
Alina Rabinovich
,
Sharon L. Squazzo
,
Roland Green
,
and
Peggy J. Farnham
Genome Res.
December 2006
16
:
1585
-
1595
;
Published in Advance
October 19, 2006
,
doi:
10.1101/gr.5520206
Abstract
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Methods
:
Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
Josée Dostie
,
Todd A. Richmond
,
Ramy A. Arnaout
,
Rebecca R. Selzer
,
William L. Lee
,
Tracey A. Honan
,
Eric D. Rubio
,
Anton Krumm
,
Justin Lamb
,
Chad Nusbaum
,
Roland D. Green
,
and
Job Dekker
Genome Res.
October 2006
16
:
1299
-
1309
;
Published in Advance
September 5, 2006
,
doi:
10.1101/gr.5571506
Abstract
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