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Roger Pique-Regi
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5
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Research
:
Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single-cell resolution
Justyna A. Resztak
,
Julong Wei
,
Samuele Zilioli
,
Edward Sendler
,
Adnan Alazizi
,
Henriette E. Mair-Meijers
,
Peijun Wu
,
Xiaoquan Wen
,
Richard B. Slatcher
,
Xiang Zhou
,
Francesca Luca
,
and
Roger Pique-Regi
Genome Res.
June 2023
33
:
839
-
856
;
Published in Advance
July 13, 2023
,
doi:
10.1101/gr.276765.122
Abstract
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Method
:
High-throughput characterization of genetic effects on DNA–protein binding and gene transcription
Cynthia A. Kalita
,
Christopher D. Brown
,
Andrew Freiman
,
Jenna Isherwood
,
Xiaoquan Wen
,
Roger Pique-Regi
,
and
Francesca Luca
Genome Res.
November 2018
28
:
1701
-
1708
;
Published in Advance
September 25, 2018
,
doi:
10.1101/gr.237354.118
Abstract
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Research
:
High-throughput allele-specific expression across 250 environmental conditions
Gregory A. Moyerbrailean
,
Allison L. Richards
,
Daniel Kurtz
,
Cynthia A. Kalita
,
Gordon O. Davis
,
Chris T. Harvey
,
Adnan Alazizi
,
Donovan Watza
,
Yoram Sorokin
,
Nancy Hauff
,
Xiang Zhou
,
Xiaoquan Wen
,
Roger Pique-Regi
,
and
Francesca Luca
Genome Res.
December 2016
26
:
1627
-
1638
;
Published in Advance
October 19, 2016
,
doi:
10.1101/gr.209759.116
Abstract
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Research
:
Bacterial infection remodels the DNA methylation landscape of human dendritic cells
Alain Pacis
,
Ludovic Tailleux
,
Alexander M. Morin
,
John Lambourne
,
Julia L. MacIsaac
,
Vania Yotova
,
Anne Dumaine
,
Anne Danckaert
,
Francesca Luca
,
Jean-Christophe Grenier
,
Kasper D. Hansen
,
Brigitte Gicquel
,
Miao Yu
,
Athma Pai
,
Chuan He
,
Jenny Tung
,
Tomi Pastinen
,
Michael S. Kobor
,
Roger Pique-Regi
,
Yoav Gilad
,
and
Luis B. Barreiro
Genome Res.
December 2015
25
:
1801
-
1811
;
Published in Advance
September 21, 2015
,
doi:
10.1101/gr.192005.115
Abstract
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Method
:
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Roger Pique-Regi
,
Jacob F. Degner
,
Athma A. Pai
,
Daniel J. Gaffney
,
Yoav Gilad
,
and
Jonathan K. Pritchard
Genome Res.
March 2011
21
:
447
-
455
;
Published in Advance
November 24, 2010
,
doi:
10.1101/gr.112623.110
Abstract
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Single-cell gene signature scoring
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