Searching journal content for Robi David Mitra in author.

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  1. Method: High-throughput single-cell functional elucidation of neurodevelopmental disease–associated genes reveals convergent mechanisms altering neuronal differentiation
    • Matthew A. Lalli,
    • Denis Avey,
    • Joseph D. Dougherty,
    • Jeffrey Milbrandt,
    • and Robi D. Mitra
    Genome Res. September 2020 30: 1317-1331; Published in Advance September 4, 2020, doi:10.1101/gr.262295.120
  2. Method: Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses
    • Yiming Kang,
    • Nikhil R. Patel,
    • Christian Shively,
    • Pamela Samantha Recio,
    • Xuhua Chen,
    • Bernd J. Wranik,
    • Griffin Kim,
    • R. Scott McIsaac,
    • Robi Mitra,
    • and Michael R. Brent
    Genome Res. March 2020 30: 459-471; Published in Advance February 14, 2020, doi:10.1101/gr.259655.119
    OPEN ACCESS ARTICLE
  3. Research: A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs
    • Yue Yun,
    • T.M. Ayodele Adesanya,
    • and Robi D. Mitra
    Genome Res. June 2012 22: 1089-1097; Published in Advance March 27, 2012, doi:10.1101/gr.117366.110
  4. Research: Retrotransposon profiling of RNA polymerase III initiation sites
    • Xiaojie Qi,
    • Kenneth Daily,
    • Kim Nguyen,
    • Haoyi Wang,
    • David Mayhew,
    • Paul Rigor,
    • Sholeh Forouzan,
    • Mark Johnston,
    • Robi David Mitra,
    • Pierre Baldi,
    • and Suzanne Sandmeyer
    Genome Res. April 2012 22: 681-692; Published in Advance January 27, 2012, doi:10.1101/gr.131219.111
  5. Method: Calling Cards enable multiplexed identification of the genomic targets of DNA-binding proteins
    • Haoyi Wang,
    • David Mayhew,
    • Xuhua Chen,
    • Mark Johnston,
    • and Robi David Mitra
    Genome Res. May 2011 21: 748-755; Published in Advance April 6, 2011, doi:10.1101/gr.114850.110
  6. Method: High-throughput discovery of rare insertions and deletions in large cohorts
    • Francesco L.M. Vallania,
    • Todd E. Druley,
    • Enrique Ramos,
    • Jue Wang,
    • Ingrid Borecki,
    • Michael Province,
    • and Robi D. Mitra
    Genome Res. December 2010 20: 1711-1718; Published in Advance November 1, 2010, doi:10.1101/gr.109157.110
  7. Research: TATA is a modular component of synthetic promoters
    • Ilaria Mogno,
    • Francesco Vallania,
    • Robi D. Mitra,
    • and Barak A. Cohen
    Genome Res. October 2010 20: 1391-1397; Published in Advance July 13, 2010, doi:10.1101/gr.106732.110
  8. Method: Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples
    • Katherine Elena Varley and
    • Robi David Mitra
    Genome Res. September 2010 20: 1279-1287; Published in Advance July 13, 2010, doi:10.1101/gr.101212.109
  9. Methods: Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes
    • Katherine Elena Varley and
    • Robi David Mitra
    Genome Res. November 2008 18: 1844-1850; Published in Advance October 10, 2008, doi:10.1101/gr.078204.108
  10. Methods: Calling cards for DNA-binding proteins
    • Haoyi Wang,
    • Mark Johnston,
    • and Robi David Mitra
    Genome Res. August 2007 17: 1202-1209; Published in Advance July 10, 2007, doi:10.1101/gr.6510207
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