Searching journal content for Robert A. Holt in author.

Displaying results 1-10 of 13
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  1. Research: Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival
    • Scott D. Brown,
    • Rene L. Warren,
    • Ewan A. Gibb,
    • Spencer D. Martin,
    • John J. Spinelli,
    • Brad H. Nelson,
    • and Robert A. Holt
    Genome Res. May 2014 24: 743-750; Published in Advance April 29, 2014, doi:10.1101/gr.165985.113
    OPEN ACCESS ARTICLE
  2. Research: Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
    • Mauro Castellarin,
    • René L. Warren,
    • J. Douglas Freeman,
    • Lisa Dreolini,
    • Martin Krzywinski,
    • Jaclyn Strauss,
    • Rebecca Barnes,
    • Peter Watson,
    • Emma Allen-Vercoe,
    • Richard A. Moore,
    • and Robert A. Holt
    Genome Res. February 2012 22: 299-306; Published in Advance October 18, 2011, doi:10.1101/gr.126516.111
    OPEN ACCESS ARTICLE
  3. Resource: Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
    • René L. Warren,
    • J. Douglas Freeman,
    • Thomas Zeng,
    • Gina Choe,
    • Sarah Munro,
    • Richard Moore,
    • John R. Webb,
    • and Robert A. Holt
    Genome Res. May 2011 21: 790-797; Published in Advance February 24, 2011, doi:10.1101/gr.115428.110
    OPEN ACCESS ARTICLE
  4. Resource: The completion of the Mammalian Gene Collection (MGC)
    • The MGC Project Team,
    • Gary Temple,
    • Daniela S. Gerhard,
    • Rebekah Rasooly,
    • Elise A. Feingold,
    • Peter J. Good,
    • Cristen Robinson,
    • Allison Mandich,
    • Jeffrey G. Derge,
    • Jeanne Lewis,
    • Debonny Shoaf,
    • Francis S. Collins,
    • Wonhee Jang,
    • Lukas Wagner,
    • Carolyn M. Shenmen,
    • Leonie Misquitta,
    • Carl F. Schaefer,
    • Kenneth H. Buetow,
    • Tom I. Bonner,
    • Linda Yankie,
    • Ming Ward,
    • Lon Phan,
    • Alex Astashyn,
    • Garth Brown,
    • Catherine Farrell,
    • Jennifer Hart,
    • Melissa Landrum,
    • Bonnie L. Maidak,
    • Michael Murphy,
    • Terence Murphy,
    • Bhanu Rajput,
    • Lillian Riddick,
    • David Webb,
    • Janet Weber,
    • Wendy Wu,
    • Kim D. Pruitt,
    • Donna Maglott,
    • Adam Siepel,
    • Brona Brejova,
    • Mark Diekhans,
    • Rachel Harte,
    • Robert Baertsch,
    • Jim Kent,
    • David Haussler,
    • Michael Brent,
    • Laura Langton,
    • Charles L.G. Comstock,
    • Michael Stevens,
    • Chaochun Wei,
    • Marijke J. van Baren,
    • Kourosh Salehi-Ashtiani,
    • Ryan R. Murray,
    • Lila Ghamsari,
    • Elizabeth Mello,
    • Chenwei Lin,
    • Christa Pennacchio,
    • Kirsten Schreiber,
    • Nicole Shapiro,
    • Amber Marsh,
    • Elizabeth Pardes,
    • Troy Moore,
    • Anita Lebeau,
    • Mike Muratet,
    • Blake Simmons,
    • David Kloske,
    • Stephanie Sieja,
    • James Hudson,
    • Praveen Sethupathy,
    • Michael Brownstein,
    • Narayan Bhat,
    • Joseph Lazar,
    • Howard Jacob,
    • Chris E. Gruber,
    • Mark R. Smith,
    • John McPherson,
    • Angela M. Garcia,
    • Preethi H. Gunaratne,
    • Jiaqian Wu,
    • Donna Muzny,
    • Richard A. Gibbs,
    • Alice C. Young,
    • Gerard G. Bouffard,
    • Robert W. Blakesley,
    • Jim Mullikin,
    • Eric D. Green,
    • Mark C. Dickson,
    • Alex C. Rodriguez,
    • Jane Grimwood,
    • Jeremy Schmutz,
    • Richard M. Myers,
    • Martin Hirst,
    • Thomas Zeng,
    • Kane Tse,
    • Michelle Moksa,
    • Merinda Deng,
    • Kevin Ma,
    • Diana Mah,
    • Johnson Pang,
    • Greg Taylor,
    • Eric Chuah,
    • Athena Deng,
    • Keith Fichter,
    • Anne Go,
    • Stephanie Lee,
    • Jing Wang,
    • Malachi Griffith,
    • Ryan Morin,
    • Richard A. Moore,
    • Michael Mayo,
    • Sarah Munro,
    • Susan Wagner,
    • Steven J.M. Jones,
    • Robert A. Holt,
    • Marco A. Marra,
    • Sun Lu,
    • Shuwei Yang,
    • James Hartigan,
    • Marcus Graf,
    • Ralf Wagner,
    • Stanley Letovksy,
    • Jacqueline C. Pulido,
    • Keith Robison,
    • Dominic Esposito,
    • James Hartley,
    • Vanessa E. Wall,
    • Ralph F. Hopkins,
    • Osamu Ohara,
    • and Stefan Wiemann
    Genome Res. December 2009 19: 2324-2333; Published in Advance September 18, 2009, doi:10.1101/gr.095976.109
  5. Methods: Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing
    • J. Douglas Freeman,
    • René L. Warren,
    • John R. Webb,
    • Brad H. Nelson,
    • and Robert A. Holt
    Genome Res. October 2009 19: 1817-1824; Published in Advance June 18, 2009, doi:10.1101/gr.092924.109
  6. LETTER: Transcription of foreign DNA in Escherichia coli
    • René L. Warren,
    • John D. Freeman,
    • Roger C. Levesque,
    • Duane E. Smailus,
    • Stephane Flibotte,
    • and Robert A. Holt
    Genome Res. November 2008 18: 1798-1805; Published in Advance August 13, 2008, doi:10.1101/gr.080358.108
  7. Next-Generation DNA Sequencing/Review: The new paradigm of flow cell sequencing
    • Robert A. Holt and
    • Steven J.M. Jones
    Genome Res. June 2008 18: 839-846; doi:10.1101/gr.073262.107
  8. Methods: Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines
    • Jaswinder Khattra,
    • Allen D. Delaney,
    • Yongjun Zhao,
    • Asim Siddiqui,
    • Jennifer Asano,
    • Helen McDonald,
    • Pawan Pandoh,
    • Noreen Dhalla,
    • Anna-liisa Prabhu,
    • Kevin Ma,
    • Stephanie Lee,
    • Adrian Ally,
    • Angela Tam,
    • Danne Sa,
    • Sean Rogers,
    • David Charest,
    • Jeff Stott,
    • Scott Zuyderduyn,
    • Richard Varhol,
    • Connie Eaves,
    • Steven Jones,
    • Robert Holt,
    • Martin Hirst,
    • Pamela A. Hoodless,
    • and Marco A. Marra
    Genome Res. January 2007 17: 108-116; Published in Advance November 29, 2006, doi:10.1101/gr.5488207
  9. RESOURCE: Sequencing and analysis of 10,967 full-length cDNA clones from Xenopus laevis and Xenopus tropicalis reveals post-tetraploidization transcriptome remodeling
    • Ryan D. Morin,
    • Elbert Chang,
    • Anca Petrescu,
    • Nancy Liao,
    • Malachi Griffith,
    • Robert Kirkpatrick,
    • Yaron S. Butterfield,
    • Alice C. Young,
    • Jeffrey Stott,
    • Sarah Barber,
    • Ryan Babakaiff,
    • Mark C. Dickson,
    • Corey Matsuo,
    • David Wong,
    • George S. Yang,
    • Duane E. Smailus,
    • Keith D. Wetherby,
    • Peggy N. Kwong,
    • Jane Grimwood,
    • Charles P. Brinkley III,
    • Mabel Brown-John,
    • Natalie D. Reddix-Dugue,
    • Michael Mayo,
    • Jeremy Schmutz,
    • Jaclyn Beland,
    • Morgan Park,
    • Susan Gibson,
    • Teika Olson,
    • Gerard G. Bouffard,
    • Miranda Tsai,
    • Ruth Featherstone,
    • Steve Chand,
    • Asim S. Siddiqui,
    • Wonhee Jang,
    • Ed Lee,
    • Steven L. Klein,
    • Robert W. Blakesley,
    • Barry R. Zeeberg,
    • Sudarshan Narasimhan,
    • John N. Weinstein,
    • Christa Prange Pennacchio,
    • Richard M. Myers,
    • Eric D. Green,
    • Lukas Wagner,
    • Daniela S. Gerhard,
    • Marco A. Marra,
    • Steven J.M. Jones,
    • and Robert A. Holt
    Genome Res. June 2006 16: 796-803; Published in Advance May 3, 2006, doi:10.1101/gr.4871006
  10. LETTER: Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla
    • Gary M. Wilson,
    • Stephane Flibotte,
    • Perseus I. Missirlis,
    • Marco A. Marra,
    • Steven Jones,
    • Kevin Thornton,
    • Andrew G. Clark,
    • and Robert A. Holt
    Genome Res. February 2006 16: 173-181; Published in Advance December 19, 2005, doi:10.1101/gr.4456006
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