Searching journal content for Rob Knight in author.

Displaying results 1-10 of 13
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  1. Research: Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling
    • Yichen Hu,
    • Amnon Amir,
    • Xiaochang Huang,
    • Yan Li,
    • Shi Huang,
    • Elaine Wolfe,
    • Sophie Weiss,
    • Rob Knight,
    • and Zhenjiang Zech Xu
    Genome Res. June 2022 32: 1112-1123; Published in Advance June 10, 2022, doi:10.1101/gr.276482.121
  2. Method: Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
    • George Armstrong,
    • Kalen Cantrell,
    • Shi Huang,
    • Daniel McDonald,
    • Niina Haiminen,
    • Anna Paola Carrieri,
    • Qiyun Zhu,
    • Antonio Gonzalez,
    • Imran McGrath,
    • Kristen L. Beck,
    • Daniel Hakim,
    • Aki S. Havulinna,
    • Guillaume Méric,
    • Teemu Niiranen,
    • Leo Lahti,
    • Veikko Salomaa,
    • Mohit Jain,
    • Michael Inouye,
    • Austin D. Swafford,
    • Ho-Cheol Kim,
    • Laxmi Parida,
    • Yoshiki Vázquez-Baeza,
    • and Rob Knight
    Genome Res. November 2021 31: 2131-2137; Published in Advance September 3, 2021, doi:10.1101/gr.275777.121
  3. Erratum: Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
    • Zhoutao Chen,
    • Long Pham,
    • Tsai-Chin Wu,
    • Guoya Mo,
    • Yu Xia,
    • Peter L. Chang,
    • Devin Porter,
    • Tan Phan,
    • Huu Che,
    • Hao Tran,
    • Vikas Bansal,
    • Justin Shaffer,
    • Pedro Belda-Ferre,
    • Greg Humphrey,
    • Rob Knight,
    • Pavel Pevzner,
    • Son Pham,
    • Yong Wang,
    • and Ming Lei
    Genome Res. May 2021 31: 934; doi:10.1101/gr.275614.121
    OPEN ACCESS ARTICLE
  4. Research: Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules
    • Jonathon L. Baker,
    • James T. Morton,
    • Márcia Dinis,
    • Ruth Alvarez,
    • Nini C. Tran,
    • Rob Knight,
    • and Anna Edlund
    Genome Res. January 2021 31: 64-74; Published in Advance November 25, 2020, doi:10.1101/gr.265645.120
  5. Method: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
    • Zhoutao Chen,
    • Long Pham,
    • Tsai-Chin Wu,
    • Guoya Mo,
    • Yu Xia,
    • Peter L. Chang,
    • Devin Porter,
    • Tan Phan,
    • Huu Che,
    • Hao Tran,
    • Vikas Bansal,
    • Justin Shaffer,
    • Pedro Belda-Ferre,
    • Greg Humphrey,
    • Rob Knight,
    • Pavel Pevzner,
    • Son Pham,
    • Yong Wang,
    • and Ming Lei
    Genome Res. June 2020 30: 898-909; Published in Advance June 15, 2020, doi:10.1101/gr.260380.119
  6. Resource: Organ-level protein networks as a reference for the host effects of the microbiome
    • Robert H. Mills,
    • Jacob M. Wozniak,
    • Alison Vrbanac,
    • Anaamika Campeau,
    • Benoit Chassaing,
    • Andrew Gewirtz,
    • Rob Knight,
    • and David J. Gonzalez
    Genome Res. February 2020 30: 276-286; Published in Advance January 28, 2020, doi:10.1101/gr.256875.119
  7. Research: Genetic and environmental control of host-gut microbiota interactions
    • Elin Org,
    • Brian W. Parks,
    • Jong Wha J. Joo,
    • Benjamin Emert,
    • William Schwartzman,
    • Eun Yong Kang,
    • Margarete Mehrabian,
    • Calvin Pan,
    • Rob Knight,
    • Robert Gunsalus,
    • Thomas A. Drake,
    • Eleazar Eskin,
    • and Aldons J. Lusis
    Genome Res. October 2015 25: 1558-1569; Published in Advance August 10, 2015, doi:10.1101/gr.194118.115
    OPEN ACCESS ARTICLE
  8. Research: Meta-analyses of studies of the human microbiota
    • Catherine A. Lozupone,
    • Jesse Stombaugh,
    • Antonio Gonzalez,
    • Gail Ackermann,
    • Doug Wendel,
    • Yoshiki Vázquez-Baeza,
    • Janet K. Jansson,
    • Jeffrey I. Gordon,
    • and Rob Knight
    Genome Res. October 2013 23: 1704-1714; Published in Advance July 16, 2013, doi:10.1101/gr.151803.112
    OPEN ACCESS ARTICLE
  9. Research: Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood
    • Simone S. Stahringer,
    • Jose C. Clemente,
    • Robin P. Corley,
    • John Hewitt,
    • Dan Knights,
    • William A. Walters,
    • Rob Knight,
    • and Kenneth S. Krauter
    Genome Res. November 2012 22: 2146-2152; Published in Advance October 12, 2012, doi:10.1101/gr.140608.112
  10. Research: Identifying genomic and metabolic features that can underlie early successional and opportunistic lifestyles of human gut symbionts
    • Catherine Lozupone,
    • Karoline Faust,
    • Jeroen Raes,
    • Jeremiah J. Faith,
    • Daniel N. Frank,
    • Jesse Zaneveld,
    • Jeffrey I. Gordon,
    • and Rob Knight
    Genome Res. October 2012 22: 1974-1984; Published in Advance June 4, 2012, doi:10.1101/gr.138198.112
    OPEN ACCESS ARTICLE
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