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Richard E. Green
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Displaying results 1-6 of
6
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Method
:
Highly accurate assembly polishing with DeepPolisher
Mira Mastoras
,
Mobin Asri
,
Lucas Brambrink
,
Prajna Hebbar
,
Alexey Kolesnikov
,
Daniel E. Cook
,
Maria Nattestad
,
Julian Lucas
,
Taylor S. Won
,
Pi-Chuan Chang
,
Andrew Carroll
,
Benedict Paten
,
Kishwar Shafin
,
and
and the Human Pangenome Reference Consortium
Genome Res.
July 2025
35
:
1595
-
1608
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280149.124
Abstract
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Research
:
Gaps and complex structurally variant loci in phased genome assemblies
David Porubsky
,
Mitchell R. Vollger
,
William T. Harvey
,
Allison N. Rozanski
,
Peter Ebert
,
Glenn Hickey
,
Patrick Hasenfeld
,
Ashley D. Sanders
,
Catherine Stober
,
Human Pangenome Reference Consortium
,
Jan O. Korbel
,
Benedict Paten
,
Tobias Marschall
,
and
Evan E. Eichler
Genome Res.
April 2023
33
:
496
-
510
;
Published in Advance
May 10, 2023
,
doi:
10.1101/gr.277334.122
Abstract
Full Text
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Research
:
Epigenetic maintenance of topological domains in the highly rearranged gibbon genome
Nathan H. Lazar
,
Kimberly A. Nevonen
,
Brendan O'Connell
,
Christine McCann
,
Rachel J. O'Neill
,
Richard E. Green
,
Thomas J. Meyer
,
Mariam Okhovat
,
and
Lucia Carbone
Genome Res.
July 2018
28
:
983
-
997
;
Published in Advance
June 18, 2018
,
doi:
10.1101/gr.233874.117
Abstract
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Research
:
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
Edward S. Rice
,
Satomi Kohno
,
John St. John
,
Son Pham
,
Jonathan Howard
,
Liana F. Lareau
,
Brendan L. O'Connell
,
Glenn Hickey
,
Joel Armstrong
,
Alden Deran
,
Ian Fiddes
,
Roy N. Platt II
,
Cathy Gresham
,
Fiona McCarthy
,
Colin Kern
,
David Haan
,
Tan Phan
,
Carl Schmidt
,
Jeremy R. Sanford
,
David A. Ray
,
Benedict Paten
,
Louis J. Guillette, Jr.
,
and
Richard E. Green
Genome Res.
May 2017
27
:
686
-
696
;
Published in Advance
January 30, 2017
,
doi:
10.1101/gr.213595.116
Abstract
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Method
:
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
Nicholas H. Putnam
,
Brendan L. O'Connell
,
Jonathan C. Stites
,
Brandon J. Rice
,
Marco Blanchette
,
Robert Calef
,
Christopher J. Troll
,
Andrew Fields
,
Paul D. Hartley
,
Charles W. Sugnet
,
David Haussler
,
Daniel S. Rokhsar
,
and
Richard E. Green
Genome Res.
March 2016
26
:
342
-
350
;
Published in Advance
February 4, 2016
,
doi:
10.1101/gr.193474.115
Abstract
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Resource
:
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Dent Earl
,
Keith Bradnam
,
John St. John
,
Aaron Darling
,
Dawei Lin
,
Joseph Fass
,
Hung On Ken Yu
,
Vince Buffalo
,
Daniel R. Zerbino
,
Mark Diekhans
,
Ngan Nguyen
,
Pramila Nuwantha Ariyaratne
,
Wing-Kin Sung
,
Zemin Ning
,
Matthias Haimel
,
Jared T. Simpson
,
Nuno A. Fonseca
,
İnanç Birol
,
T. Roderick Docking
,
Isaac Y. Ho
,
Daniel S. Rokhsar
,
Rayan Chikhi
,
Dominique Lavenier
,
Guillaume Chapuis
,
Delphine Naquin
,
Nicolas Maillet
,
Michael C. Schatz
,
David R. Kelley
,
Adam M. Phillippy
,
Sergey Koren
,
Shiaw-Pyng Yang
,
Wei Wu
,
Wen-Chi Chou
,
Anuj Srivastava
,
Timothy I. Shaw
,
J. Graham Ruby
,
Peter Skewes-Cox
,
Miguel Betegon
,
Michelle T. Dimon
,
Victor Solovyev
,
Igor Seledtsov
,
Petr Kosarev
,
Denis Vorobyev
,
Ricardo Ramirez-Gonzalez
,
Richard Leggett
,
Dan MacLean
,
Fangfang Xia
,
Ruibang Luo
,
Zhenyu Li
,
Yinlong Xie
,
Binghang Liu
,
Sante Gnerre
,
Iain MacCallum
,
Dariusz Przybylski
,
Filipe J. Ribeiro
,
Shuangye Yin
,
Ted Sharpe
,
Giles Hall
,
Paul J. Kersey
,
Richard Durbin
,
Shaun D. Jackman
,
Jarrod A. Chapman
,
Xiaoqiu Huang
,
Joseph L. DeRisi
,
Mario Caccamo
,
Yingrui Li
,
David B. Jaffe
,
Richard E. Green
,
David Haussler
,
Ian Korf
,
and
Benedict Paten
Genome Res.
December 2011
21
:
2224
-
2241
;
Published in Advance
September 16, 2011
,
doi:
10.1101/gr.126599.111
Abstract
Full Text
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