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Richard Durbin
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Displaying results 1-10 of
23
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Method
:
Highly accurate assembly polishing with DeepPolisher
Mira Mastoras
,
Mobin Asri
,
Lucas Brambrink
,
Prajna Hebbar
,
Alexey Kolesnikov
,
Daniel E. Cook
,
Maria Nattestad
,
Julian Lucas
,
Taylor S. Won
,
Pi-Chuan Chang
,
Andrew Carroll
,
Benedict Paten
,
Kishwar Shafin
,
and
and the Human Pangenome Reference Consortium
Genome Res.
July 2025
35
:
1595
-
1608
;
Published in Advance
May 19, 2025
,
doi:
10.1101/gr.280149.124
Abstract
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Research
:
Lake Malawi cichlid pangenome graph reveals extensive structural variation driven by transposable elements
Fu Xiang Quah
,
Miguel Vasconcelos Almeida
,
Moritz Blumer
,
Chengwei Ulrika Yuan
,
Bettina Fischer
,
Kirsten See
,
Ben Jackson
,
Richard Zatha
,
Bosco Rusuwa
,
George F. Turner
,
M. Emília Santos
,
Hannes Svardal
,
Martin Hemberg
,
Richard Durbin
,
and
Eric Miska
Genome Res.
May 2025
35
:
1094
-
1107
;
Published in Advance
April 10, 2025
,
doi:
10.1101/gr.279674.124
Abstract
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Method
:
MCHelper automatically curates transposable element libraries across eukaryotic species
Simon Orozco-Arias
,
Pío Sierra
,
Richard Durbin
,
and
Josefa González
Genome Res.
December 2024
34
:
2256
-
2268
;
Published in Advance
December 9, 2024
,
doi:
10.1101/gr.278821.123
Abstract
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Method
:
Ultrafast genome-wide inference of pairwise coalescence times
Regev Schweiger
and
Richard Durbin
Genome Res.
July 2023
33
:
1023
-
1031
;
Published in Advance
August 10, 2023
,
doi:
10.1101/gr.277665.123
Abstract
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Research
:
Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
Peter O. Mulhair
,
Liam Crowley
,
Douglas H. Boyes
,
Amber Harper
,
Owen T. Lewis
,
Darwin Tree of Life Consortium
,
and
Peter W.H. Holland
Genome Res.
January 2023
33
:
32
-
44
;
Published in Advance
December 8, 2022
,
doi:
10.1101/gr.277118.122
Abstract
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Resource
:
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider
,
Tina Graves-Lindsay
,
Kerstin Howe
,
Nathan Bouk
,
Hsiu-Chuan Chen
,
Paul A. Kitts
,
Terence D. Murphy
,
Kim D. Pruitt
,
Françoise Thibaud-Nissen
,
Derek Albracht
,
Robert S. Fulton
,
Milinn Kremitzki
,
Vincent Magrini
,
Chris Markovic
,
Sean McGrath
,
Karyn Meltz Steinberg
,
Kate Auger
,
William Chow
,
Joanna Collins
,
Glenn Harden
,
Timothy Hubbard
,
Sarah Pelan
,
Jared T. Simpson
,
Glen Threadgold
,
James Torrance
,
Jonathan M. Wood
,
Laura Clarke
,
Sergey Koren
,
Matthew Boitano
,
Paul Peluso
,
Heng Li
,
Chen-Shan Chin
,
Adam M. Phillippy
,
Richard Durbin
,
Richard K. Wilson
,
Paul Flicek
,
Evan E. Eichler
,
and
Deanna M. Church
Genome Res.
May 2017
27
:
849
-
864
;
Published in Advance
April 10, 2017
,
doi:
10.1101/gr.213611.116
Abstract
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Method
:
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes
Dirk D. Dolle
,
Zhicheng Liu
,
Matthew Cotten
,
Jared T. Simpson
,
Zamin Iqbal
,
Richard Durbin
,
Shane A. McCarthy
,
and
Thomas M. Keane
Genome Res.
February 2017
27
:
300
-
309
;
Published in Advance
December 16, 2016
,
doi:
10.1101/gr.211748.116
Abstract
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Resource
:
Efficient de novo assembly of large genomes using compressed data structures
Jared T. Simpson
and
Richard Durbin
Genome Res.
March 2012
22
:
549
-
556
;
Published in Advance
December 7, 2011
,
doi:
10.1101/gr.126953.111
Abstract
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Resource
:
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Dent Earl
,
Keith Bradnam
,
John St. John
,
Aaron Darling
,
Dawei Lin
,
Joseph Fass
,
Hung On Ken Yu
,
Vince Buffalo
,
Daniel R. Zerbino
,
Mark Diekhans
,
Ngan Nguyen
,
Pramila Nuwantha Ariyaratne
,
Wing-Kin Sung
,
Zemin Ning
,
Matthias Haimel
,
Jared T. Simpson
,
Nuno A. Fonseca
,
İnanç Birol
,
T. Roderick Docking
,
Isaac Y. Ho
,
Daniel S. Rokhsar
,
Rayan Chikhi
,
Dominique Lavenier
,
Guillaume Chapuis
,
Delphine Naquin
,
Nicolas Maillet
,
Michael C. Schatz
,
David R. Kelley
,
Adam M. Phillippy
,
Sergey Koren
,
Shiaw-Pyng Yang
,
Wei Wu
,
Wen-Chi Chou
,
Anuj Srivastava
,
Timothy I. Shaw
,
J. Graham Ruby
,
Peter Skewes-Cox
,
Miguel Betegon
,
Michelle T. Dimon
,
Victor Solovyev
,
Igor Seledtsov
,
Petr Kosarev
,
Denis Vorobyev
,
Ricardo Ramirez-Gonzalez
,
Richard Leggett
,
Dan MacLean
,
Fangfang Xia
,
Ruibang Luo
,
Zhenyu Li
,
Yinlong Xie
,
Binghang Liu
,
Sante Gnerre
,
Iain MacCallum
,
Dariusz Przybylski
,
Filipe J. Ribeiro
,
Shuangye Yin
,
Ted Sharpe
,
Giles Hall
,
Paul J. Kersey
,
Richard Durbin
,
Shaun D. Jackman
,
Jarrod A. Chapman
,
Xiaoqiu Huang
,
Joseph L. DeRisi
,
Mario Caccamo
,
Yingrui Li
,
David B. Jaffe
,
Richard E. Green
,
David Haussler
,
Ian Korf
,
and
Benedict Paten
Genome Res.
December 2011
21
:
2224
-
2241
;
Published in Advance
September 16, 2011
,
doi:
10.1101/gr.126599.111
Abstract
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Method
:
Revealing the genetic structure of a trait by sequencing a population under selection
Leopold Parts
,
Francisco A. Cubillos
,
Jonas Warringer
,
Kanika Jain
,
Francisco Salinas
,
Suzannah J. Bumpstead
,
Mikael Molin
,
Amin Zia
,
Jared T. Simpson
,
Michael A. Quail
,
Alan Moses
,
Edward J. Louis
,
Richard Durbin
,
and
Gianni Liti
Genome Res.
July 2011
21
:
1131
-
1138
;
Published in Advance
March 21, 2011
,
doi:
10.1101/gr.116731.110
Abstract
Full Text
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Single-cell gene signature scoring
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