Searching journal content for R F Smith in author.

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  1. Research: Lambdoid phages with abundant Chi recombination hotspots reflect diverse viral strategies for recombination-dependent growth
    • Clarence Zheng,
    • Sherwood R. Casjens,
    • Alan R. Davidson,
    • Susan K. Amundsen,
    • and Gerald R. Smith
    Genome Res. August 2025 35: 1767-1780; Published in Advance July 10, 2025, doi:10.1101/gr.280248.124
    OPEN ACCESS ARTICLE
  2. Resource: Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise
    • Aliza B. Rubenstein,
    • Gregory R. Smith,
    • Zidong Zhang,
    • Xi Chen,
    • Toby L. Chambers,
    • Frederique Ruf-Zamojski,
    • Natalia Mendelev,
    • Wan Sze Cheng,
    • Michel Zamojski,
    • Mary Anne S. Amper,
    • Venugopalan D. Nair,
    • Andrew R. Marderstein,
    • Stephen B. Montgomery,
    • Olga G. Troyanskaya,
    • Elena Zaslavsky,
    • Todd Trappe,
    • Scott Trappe,
    • and Stuart C. Sealfon
    Genome Res. July 2025 35: 1664-1677; Published in Advance May 20, 2025, doi:10.1101/gr.280051.124
  3. Resource: A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells
    • William K.M. Lai,
    • Luca Mariani,
    • Gerson Rothschild,
    • Edwin R. Smith,
    • Bryan J. Venters,
    • Thomas R. Blanda,
    • Prashant K. Kuntala,
    • Kylie Bocklund,
    • Joshua Mairose,
    • Sarah N. Dweikat,
    • Katelyn Mistretta,
    • Matthew J. Rossi,
    • Daniela James,
    • James T. Anderson,
    • Sabrina K. Phanor,
    • Wanwei Zhang,
    • Zibo Zhao,
    • Avani P. Shah,
    • Katherine Novitzky,
    • Eileen McAnarney,
    • Michael-C. Keogh,
    • Ali Shilatifard,
    • Uttiya Basu,
    • Martha L. Bulyk,
    • and B. Franklin Pugh
    Genome Res. September 2021 31: 1663-1679; Published in Advance August 23, 2021, doi:10.1101/gr.275472.121
  4. Method: Genomic loci susceptible to systematic sequencing bias in clinical whole genomes
    • Timothy M. Freeman,
    • Genomics England Research Consortium,
    • Dennis Wang,
    • and Jason Harris
    Genome Res. March 2020 30: 415-426; Published in Advance March 10, 2020, doi:10.1101/gr.255349.119
  5. Research: Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
    • Tongwu Zhang,
    • Jiyeon Choi,
    • Michael A. Kovacs,
    • Jianxin Shi,
    • Mai Xu,
    • NISC Comparative Sequencing Program,
    • Melanoma Meta-Analysis Consortium,
    • Alisa M. Goldstein,
    • Adam J. Trower,
    • D. Timothy Bishop,
    • Mark M. Iles,
    • David L. Duffy,
    • Stuart MacGregor,
    • Laufey T. Amundadottir,
    • Matthew H. Law,
    • Stacie K. Loftus,
    • William J. Pavan,
    • and Kevin M. Brown
    Genome Res. November 2018 28: 1621-1635; Published in Advance October 17, 2018, doi:10.1101/gr.233304.117
  6. Method: TransRate: reference-free quality assessment of de novo transcriptome assemblies
    • Richard Smith-Unna,
    • Chris Boursnell,
    • Rob Patro,
    • Julian M. Hibberd,
    • and Steven Kelly
    Genome Res. August 2016 26: 1134-1144; Published in Advance June 1, 2016, doi:10.1101/gr.196469.115
    OPEN ACCESS ARTICLE
  7. Research: Methylomic trajectories across human fetal brain development
    • Helen Spiers,
    • Eilis Hannon,
    • Leonard C. Schalkwyk,
    • Rebecca Smith,
    • Chloe C.Y. Wong,
    • Michael C. O’Donovan,
    • Nicholas J. Bray,
    • and Jonathan Mill
    Genome Res. March 2015 25: 338-352; Published in Advance February 3, 2015, doi:10.1101/gr.180273.114
    OPEN ACCESS ARTICLE
  8. Research: Evolutionarily diverse determinants of meiotic DNA break and recombination landscapes across the genome
    • Kyle R. Fowler,
    • Mariko Sasaki,
    • Neta Milman,
    • Scott Keeney,
    • and Gerald R. Smith
    Genome Res. October 2014 24: 1650-1664; Published in Advance July 14, 2014, doi:10.1101/gr.172122.114
  9. Research: Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality
    • Daniel F. Simola,
    • Lothar Wissler,
    • Greg Donahue,
    • Robert M. Waterhouse,
    • Martin Helmkampf,
    • Julien Roux,
    • Sanne Nygaard,
    • Karl M. Glastad,
    • Darren E. Hagen,
    • Lumi Viljakainen,
    • Justin T. Reese,
    • Brendan G. Hunt,
    • Dan Graur,
    • Eran Elhaik,
    • Evgenia V. Kriventseva,
    • Jiayu Wen,
    • Brian J. Parker,
    • Elizabeth Cash,
    • Eyal Privman,
    • Christopher P. Childers,
    • Monica C. Muñoz-Torres,
    • Jacobus J. Boomsma,
    • Erich Bornberg-Bauer,
    • Cameron R. Currie,
    • Christine G. Elsik,
    • Garret Suen,
    • Michael A.D. Goodisman,
    • Laurent Keller,
    • Jürgen Liebig,
    • Alan Rawls,
    • Danny Reinberg,
    • Chris D. Smith,
    • Chris R. Smith,
    • Neil Tsutsui,
    • Yannick Wurm,
    • Evgeny M. Zdobnov,
    • Shelley L. Berger,
    • and Jürgen Gadau
    Genome Res. August 2013 23: 1235-1247; Published in Advance May 1, 2013, doi:10.1101/gr.155408.113
  10. Resource: The completion of the Mammalian Gene Collection (MGC)
    • The MGC Project Team,
    • Gary Temple,
    • Daniela S. Gerhard,
    • Rebekah Rasooly,
    • Elise A. Feingold,
    • Peter J. Good,
    • Cristen Robinson,
    • Allison Mandich,
    • Jeffrey G. Derge,
    • Jeanne Lewis,
    • Debonny Shoaf,
    • Francis S. Collins,
    • Wonhee Jang,
    • Lukas Wagner,
    • Carolyn M. Shenmen,
    • Leonie Misquitta,
    • Carl F. Schaefer,
    • Kenneth H. Buetow,
    • Tom I. Bonner,
    • Linda Yankie,
    • Ming Ward,
    • Lon Phan,
    • Alex Astashyn,
    • Garth Brown,
    • Catherine Farrell,
    • Jennifer Hart,
    • Melissa Landrum,
    • Bonnie L. Maidak,
    • Michael Murphy,
    • Terence Murphy,
    • Bhanu Rajput,
    • Lillian Riddick,
    • David Webb,
    • Janet Weber,
    • Wendy Wu,
    • Kim D. Pruitt,
    • Donna Maglott,
    • Adam Siepel,
    • Brona Brejova,
    • Mark Diekhans,
    • Rachel Harte,
    • Robert Baertsch,
    • Jim Kent,
    • David Haussler,
    • Michael Brent,
    • Laura Langton,
    • Charles L.G. Comstock,
    • Michael Stevens,
    • Chaochun Wei,
    • Marijke J. van Baren,
    • Kourosh Salehi-Ashtiani,
    • Ryan R. Murray,
    • Lila Ghamsari,
    • Elizabeth Mello,
    • Chenwei Lin,
    • Christa Pennacchio,
    • Kirsten Schreiber,
    • Nicole Shapiro,
    • Amber Marsh,
    • Elizabeth Pardes,
    • Troy Moore,
    • Anita Lebeau,
    • Mike Muratet,
    • Blake Simmons,
    • David Kloske,
    • Stephanie Sieja,
    • James Hudson,
    • Praveen Sethupathy,
    • Michael Brownstein,
    • Narayan Bhat,
    • Joseph Lazar,
    • Howard Jacob,
    • Chris E. Gruber,
    • Mark R. Smith,
    • John McPherson,
    • Angela M. Garcia,
    • Preethi H. Gunaratne,
    • Jiaqian Wu,
    • Donna Muzny,
    • Richard A. Gibbs,
    • Alice C. Young,
    • Gerard G. Bouffard,
    • Robert W. Blakesley,
    • Jim Mullikin,
    • Eric D. Green,
    • Mark C. Dickson,
    • Alex C. Rodriguez,
    • Jane Grimwood,
    • Jeremy Schmutz,
    • Richard M. Myers,
    • Martin Hirst,
    • Thomas Zeng,
    • Kane Tse,
    • Michelle Moksa,
    • Merinda Deng,
    • Kevin Ma,
    • Diana Mah,
    • Johnson Pang,
    • Greg Taylor,
    • Eric Chuah,
    • Athena Deng,
    • Keith Fichter,
    • Anne Go,
    • Stephanie Lee,
    • Jing Wang,
    • Malachi Griffith,
    • Ryan Morin,
    • Richard A. Moore,
    • Michael Mayo,
    • Sarah Munro,
    • Susan Wagner,
    • Steven J.M. Jones,
    • Robert A. Holt,
    • Marco A. Marra,
    • Sun Lu,
    • Shuwei Yang,
    • James Hartigan,
    • Marcus Graf,
    • Ralf Wagner,
    • Stanley Letovksy,
    • Jacqueline C. Pulido,
    • Keith Robison,
    • Dominic Esposito,
    • James Hartley,
    • Vanessa E. Wall,
    • Ralph F. Hopkins,
    • Osamu Ohara,
    • and Stefan Wiemann
    Genome Res. December 2009 19: 2324-2333; Published in Advance September 18, 2009, doi:10.1101/gr.095976.109
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