Searching journal content for Pramila N. Ariyaratne in author.

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  1. Resource: Assemblathon 1: A competitive assessment of de novo short read assembly methods
    • Dent Earl,
    • Keith Bradnam,
    • John St. John,
    • Aaron Darling,
    • Dawei Lin,
    • Joseph Fass,
    • Hung On Ken Yu,
    • Vince Buffalo,
    • Daniel R. Zerbino,
    • Mark Diekhans,
    • Ngan Nguyen,
    • Pramila Nuwantha Ariyaratne,
    • Wing-Kin Sung,
    • Zemin Ning,
    • Matthias Haimel,
    • Jared T. Simpson,
    • Nuno A. Fonseca,
    • İnanç Birol,
    • T. Roderick Docking,
    • Isaac Y. Ho,
    • Daniel S. Rokhsar,
    • Rayan Chikhi,
    • Dominique Lavenier,
    • Guillaume Chapuis,
    • Delphine Naquin,
    • Nicolas Maillet,
    • Michael C. Schatz,
    • David R. Kelley,
    • Adam M. Phillippy,
    • Sergey Koren,
    • Shiaw-Pyng Yang,
    • Wei Wu,
    • Wen-Chi Chou,
    • Anuj Srivastava,
    • Timothy I. Shaw,
    • J. Graham Ruby,
    • Peter Skewes-Cox,
    • Miguel Betegon,
    • Michelle T. Dimon,
    • Victor Solovyev,
    • Igor Seledtsov,
    • Petr Kosarev,
    • Denis Vorobyev,
    • Ricardo Ramirez-Gonzalez,
    • Richard Leggett,
    • Dan MacLean,
    • Fangfang Xia,
    • Ruibang Luo,
    • Zhenyu Li,
    • Yinlong Xie,
    • Binghang Liu,
    • Sante Gnerre,
    • Iain MacCallum,
    • Dariusz Przybylski,
    • Filipe J. Ribeiro,
    • Shuangye Yin,
    • Ted Sharpe,
    • Giles Hall,
    • Paul J. Kersey,
    • Richard Durbin,
    • Shaun D. Jackman,
    • Jarrod A. Chapman,
    • Xiaoqiu Huang,
    • Joseph L. DeRisi,
    • Mario Caccamo,
    • Yingrui Li,
    • David B. Jaffe,
    • Richard E. Green,
    • David Haussler,
    • Ian Korf,
    • and Benedict Paten
    Genome Res. December 2011 21: 2224-2241; Published in Advance September 16, 2011, doi:10.1101/gr.126599.111
    OPEN ACCESS ARTICLE
  2. Research: Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes
    • Axel M. Hillmer,
    • Fei Yao,
    • Koichiro Inaki,
    • Wah Heng Lee,
    • Pramila N. Ariyaratne,
    • Audrey S.M. Teo,
    • Xing Yi Woo,
    • Zhenshui Zhang,
    • Hao Zhao,
    • Leena Ukil,
    • Jieqi P. Chen,
    • Feng Zhu,
    • Jimmy B.Y. So,
    • Manuel Salto-Tellez,
    • Wan Ting Poh,
    • Kelson F.B. Zawack,
    • Niranjan Nagarajan,
    • Song Gao,
    • Guoliang Li,
    • Vikrant Kumar,
    • Hui Ping J. Lim,
    • Yee Yen Sia,
    • Chee Seng Chan,
    • See Ting Leong,
    • Say Chuan Neo,
    • Poh Sum D. Choi,
    • Hervé Thoreau,
    • Patrick B.O. Tan,
    • Atif Shahab,
    • Xiaoan Ruan,
    • Jonas Bergh,
    • Per Hall,
    • Valère Cacheux-Rataboul,
    • Chia-Lin Wei,
    • Khay Guan Yeoh,
    • Wing-Kin Sung,
    • Guillaume Bourque,
    • Edison T. Liu,
    • and Yijun Ruan
    Genome Res. May 2011 21: 665-675; Published in Advance April 5, 2011, doi:10.1101/gr.113555.110
    OPEN ACCESS ARTICLE
  3. Research: Transcriptional consequences of genomic structural aberrations in breast cancer
    • Koichiro Inaki,
    • Axel M. Hillmer,
    • Leena Ukil,
    • Fei Yao,
    • Xing Yi Woo,
    • Leah A. Vardy,
    • Kelson Folkvard Braaten Zawack,
    • Charlie Wah Heng Lee,
    • Pramila Nuwantha Ariyaratne,
    • Yang Sun Chan,
    • Kartiki Vasant Desai,
    • Jonas Bergh,
    • Per Hall,
    • Thomas Choudary Putti,
    • Wai Loon Ong,
    • Atif Shahab,
    • Valere Cacheux-Rataboul,
    • Radha Krishna Murthy Karuturi,
    • Wing-Kin Sung,
    • Xiaoan Ruan,
    • Guillaume Bourque,
    • Yijun Ruan,
    • and Edison T. Liu
    Genome Res. May 2011 21: 676-687; Published in Advance April 5, 2011, doi:10.1101/gr.113225.110
    OPEN ACCESS ARTICLE
  4. LETTER: Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)
    • Yijun Ruan,
    • Hong Sain Ooi,
    • Siew Woh Choo,
    • Kuo Ping Chiu,
    • Xiao Dong Zhao,
    • K.G. Srinivasan,
    • Fei Yao,
    • Chiou Yu Choo,
    • Jun Liu,
    • Pramila Ariyaratne,
    • Wilson G.W. Bin,
    • Vladimir A. Kuznetsov,
    • Atif Shahab,
    • Wing-Kin Sung,
    • Guillaume Bourque,
    • Nallasivam Palanisamy,
    • and Chia-Lin Wei
    Genome Res. June 2007 17: 828-838; doi:10.1101/gr.6018607
    OPEN ACCESS ARTICLE
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