Searching journal content for Pouya Kheradpour in author.

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  1. Resource: Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster
    • Matthew Slattery,
    • Lijia Ma,
    • Rebecca F. Spokony,
    • Robert K. Arthur,
    • Pouya Kheradpour,
    • Anshul Kundaje,
    • Nicolas Nègre,
    • Alex Crofts,
    • Ryan Ptashkin,
    • Jennifer Zieba,
    • Alexander Ostapenko,
    • Sarah Suchy,
    • Alec Victorsen,
    • Nader Jameel,
    • A. Jason Grundstad,
    • Wenxuan Gao,
    • Jennifer R. Moran,
    • E. Jay Rehm,
    • Robert L. Grossman,
    • Manolis Kellis,
    • and Kevin P. White
    Genome Res. July 2014 24: 1224-1235; Published in Advance July 1, 2014, doi:10.1101/gr.168807.113
    OPEN ACCESS ARTICLE
  2. Research: Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
    • Pouya Kheradpour,
    • Jason Ernst,
    • Alexandre Melnikov,
    • Peter Rogov,
    • Li Wang,
    • Xiaolan Zhang,
    • Jessica Alston,
    • Tarjei S. Mikkelsen,
    • and Manolis Kellis
    Genome Res. May 2013 23: 800-811; Published in Advance March 19, 2013, doi:10.1101/gr.144899.112
    OPEN ACCESS ARTICLE
  3. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  4. Method: Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes
    • Michael F. Lin,
    • Pouya Kheradpour,
    • Stefan Washietl,
    • Brian J. Parker,
    • Jakob S. Pedersen,
    • and Manolis Kellis
    Genome Res. November 2011 21: 1916-1928; Published in Advance October 12, 2011, doi:10.1101/gr.108753.110
    OPEN ACCESS ARTICLE
  5. Platypus Special/Letter: Conservation of small RNA pathways in platypus
    • Elizabeth P. Murchison,
    • Pouya Kheradpour,
    • Ravi Sachidanandam,
    • Carly Smith,
    • Emily Hodges,
    • Zhenyu Xuan,
    • Manolis Kellis,
    • Frank Grützner,
    • Alexander Stark,
    • and Gregory J. Hannon
    Genome Res. June 2008 18: 995-1004; Published in Advance May 7, 2008, doi:10.1101/gr.073056.107
  6. 12 Drosophila Genomes/Letter: Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    • Alexander Stark,
    • Pouya Kheradpour,
    • Leopold Parts,
    • Julius Brennecke,
    • Emily Hodges,
    • Gregory J. Hannon,
    • and Manolis Kellis
    Genome Res. December 2007 17: 1865-1879; Published in Advance November 7, 2007, doi:10.1101/gr.6593807
    OPEN ACCESS ARTICLE
  7. 12 Drosophila Genomes/Methods: Reliable prediction of regulator targets using 12 Drosophila genomes
    • Pouya Kheradpour,
    • Alexander Stark,
    • Sushmita Roy,
    • and Manolis Kellis
    Genome Res. December 2007 17: 1919-1931; Published in Advance November 7, 2007, doi:10.1101/gr.7090407
    OPEN ACCESS ARTICLE
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