Searching journal content for Piero Carninci in author.

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  1. Method: Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs
    • Michiel de Hoon,
    • Alessandro Bonetti,
    • Charles Plessy,
    • Yoshinari Ando,
    • Chung-Chau Hon,
    • Yuri Ishizu,
    • Masayoshi Itoh,
    • Sachi Kato,
    • Dongyan Lin,
    • Sho Maekawa,
    • Mitsuyoshi Murata,
    • Hiromi Nishiyori,
    • Jay W. Shin,
    • Jens Stolte,
    • Ana Maria Suzuki,
    • Michihira Tagami,
    • Hazuki Takahashi,
    • Supat Thongjuea,
    • Alistair R.R. Forrest,
    • Yoshihide Hayashizaki,
    • Juha Kere,
    • and Piero Carninci
    Genome Res. September 2022 32: 1727-1735; Published in Advance August 12, 2022, doi:10.1101/gr.276647.122
    OPEN ACCESS ARTICLE
  2. Research: Embryonic LTR retrotransposons supply promoter modules to somatic tissues
    • Kosuke Hashimoto,
    • Eeva-Mari Jouhilahti,
    • Virpi Töhönen,
    • Piero Carninci,
    • Juha Kere,
    • and Shintaro Katayama
    Genome Res. November 2021 31: 1983-1993; Published in Advance October 21, 2021, doi:10.1101/gr.275354.121
  3. Research: Antisense RNAs during early vertebrate development are divided in groups with distinct features
    • Sanjana Pillay,
    • Hazuki Takahashi,
    • Piero Carninci,
    • and Aditi Kanhere
    Genome Res. June 2021 31: 995-1010; Published in Advance April 1, 2021, doi:10.1101/gr.262964.120
    OPEN ACCESS ARTICLE
  4. Corrigendum: Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping
    • Jordan A. Ramilowski,
    • Chi Wai Yip,
    • Saumya Agrawal,
    • Jen-Chien Chang,
    • Yari Ciani,
    • Ivan V. Kulakovskiy,
    • Mickaël Mendez,
    • Jasmine Li Ching Ooi,
    • John F. Ouyang,
    • Nick Parkinson,
    • Andreas Petri,
    • Leonie Roos,
    • Jessica Severin,
    • Kayoko Yasuzawa,
    • Imad Abugessaisa,
    • Altuna Akalin,
    • Ivan V. Antonov,
    • Erik Arner,
    • Alessandro Bonetti,
    • Hidemasa Bono,
    • Beatrice Borsari,
    • Frank Brombacher,
    • Christopher J.F. Cameron,
    • Carlo Vittorio Cannistraci,
    • Ryan Cardenas,
    • Melissa Cardon,
    • Howard Chang,
    • Josée Dostie,
    • Luca Ducoli,
    • Alexander Favorov,
    • Alexandre Fort,
    • Diego Garrido,
    • Noa Gil,
    • Juliette Gimenez,
    • Reto Guler,
    • Lusy Handoko,
    • Jayson Harshbarger,
    • Akira Hasegawa,
    • Yuki Hasegawa,
    • Kosuke Hashimoto,
    • Norihito Hayatsu,
    • Peter Heutink,
    • Tetsuro Hirose,
    • Eddie L. Imada,
    • Masayoshi Itoh,
    • Bogumil Kaczkowski,
    • Aditi Kanhere,
    • Emily Kawabata,
    • Hideya Kawaji,
    • Tsugumi Kawashima,
    • S. Thomas Kelly,
    • Miki Kojima,
    • Naoto Kondo,
    • Haruhiko Koseki,
    • Tsukasa Kouno,
    • Anton Kratz,
    • Mariola Kurowska-Stolarska,
    • Andrew Tae Jun Kwon,
    • Jeffrey Leek,
    • Andreas Lennartsson,
    • Marina Lizio,
    • Fernando López-Redondo,
    • Joachim Luginbühl,
    • Shiori Maeda,
    • Vsevolod J. Makeev,
    • Luigi Marchionni,
    • Yulia A. Medvedeva,
    • Aki Minoda,
    • Ferenc Müller,
    • Manuel Muñoz-Aguirre,
    • Mitsuyoshi Murata,
    • Hiromi Nishiyori,
    • Kazuhiro R. Nitta,
    • Shuhei Noguchi,
    • Yukihiko Noro,
    • Ramil Nurtdinov,
    • Yasushi Okazaki,
    • Valerio Orlando,
    • Denis Paquette,
    • Callum J.C. Parr,
    • Owen J.L. Rackham,
    • Patrizia Rizzu,
    • Diego Fernando Sánchez Martinez,
    • Albin Sandelin,
    • Pillay Sanjana,
    • Colin A.M. Semple,
    • Youtaro Shibayama,
    • Divya M. Sivaraman,
    • Takahiro Suzuki,
    • Suzannah C. Szumowski,
    • Michihira Tagami,
    • Martin S. Taylor,
    • Chikashi Terao,
    • Malte Thodberg,
    • Supat Thongjuea,
    • Vidisha Tripathi,
    • Igor Ulitsky,
    • Roberto Verardo,
    • Ilya E. Vorontsov,
    • Chinatsu Yamamoto,
    • Robert S. Young,
    • J. Kenneth Baillie,
    • Alistair R.R. Forrest,
    • Roderic Guigó,
    • Michael M. Hoffman,
    • Chung Chau Hon,
    • Takeya Kasukawa,
    • Sakari Kauppinen,
    • Juha Kere,
    • Boris Lenhard,
    • Claudio Schneider,
    • Harukazu Suzuki,
    • Ken Yagi,
    • Michiel J.L. de Hoon,
    • Jay W. Shin,
    • and Piero Carninci
    Genome Res. September 2020 30: 1377-1; doi:10.1101/gr.270330.120
    OPEN ACCESS ARTICLE
  5. Research: Comparative transcriptomics of primary cells in vertebrates
    • Tanvir Alam,
    • Saumya Agrawal,
    • Jessica Severin,
    • Robert S. Young,
    • Robin Andersson,
    • Erik Arner,
    • Akira Hasegawa,
    • Marina Lizio,
    • Jordan A. Ramilowski,
    • Imad Abugessaisa,
    • Yuri Ishizu,
    • Shohei Noma,
    • Hiroshi Tarui,
    • Martin S. Taylor,
    • Timo Lassmann,
    • Masayoshi Itoh,
    • Takeya Kasukawa,
    • Hideya Kawaji,
    • Luigi Marchionni,
    • Guojun Sheng,
    • Alistair R.R. Forrest,
    • Levon M. Khachigian,
    • Yoshihide Hayashizaki,
    • Piero Carninci,
    • and Michiel J.L. de Hoon
    Genome Res. July 2020 30: 951-961; Published in Advance July 27, 2020, doi:10.1101/gr.255679.119
    OPEN ACCESS ARTICLE
  6. Resource: Recounting the FANTOM CAGE-Associated Transcriptome
    • Eddie Luidy Imada,
    • Diego Fernando Sanchez,
    • Leonardo Collado-Torres,
    • Christopher Wilks,
    • Tejasvi Matam,
    • Wikum Dinalankara,
    • Aleksey Stupnikov,
    • Francisco Lobo-Pereira,
    • Chi-Wai Yip,
    • Kayoko Yasuzawa,
    • Naoto Kondo,
    • Masayoshi Itoh,
    • Harukazu Suzuki,
    • Takeya Kasukawa,
    • Chung-Chau Hon,
    • Michiel J.L. de Hoon,
    • Jay W. Shin,
    • Piero Carninci,
    • Andrew E. Jaffe,
    • Jeffrey T. Leek,
    • Alexander Favorov,
    • Gloria R. Franco,
    • Ben Langmead,
    • and Luigi Marchionni
    Genome Res. July 2020 30: 1073-1081; Published in Advance February 20, 2020, doi:10.1101/gr.254656.119
    OPEN ACCESS ARTICLE
  7. Resource: Functional annotation of human long noncoding RNAs via molecular phenotyping
    • Jordan A. Ramilowski,
    • Chi Wai Yip,
    • Saumya Agrawal,
    • Jen-Chien Chang,
    • Yari Ciani,
    • Ivan V. Kulakovskiy,
    • Mickaël Mendez,
    • Jasmine Li Ching Ooi,
    • John F. Ouyang,
    • Nick Parkinson,
    • Andreas Petri,
    • Leonie Roos,
    • Jessica Severin,
    • Kayoko Yasuzawa,
    • Imad Abugessaisa,
    • Altuna Akalin,
    • Ivan V. Antonov,
    • Erik Arner,
    • Alessandro Bonetti,
    • Hidemasa Bono,
    • Beatrice Borsari,
    • Frank Brombacher,
    • Christopher J.F. Cameron,
    • Carlo Vittorio Cannistraci,
    • Ryan Cardenas,
    • Melissa Cardon,
    • Howard Chang,
    • Josée Dostie,
    • Luca Ducoli,
    • Alexander Favorov,
    • Alexandre Fort,
    • Diego Garrido,
    • Noa Gil,
    • Juliette Gimenez,
    • Reto Guler,
    • Lusy Handoko,
    • Jayson Harshbarger,
    • Akira Hasegawa,
    • Yuki Hasegawa,
    • Kosuke Hashimoto,
    • Norihito Hayatsu,
    • Peter Heutink,
    • Tetsuro Hirose,
    • Eddie L. Imada,
    • Masayoshi Itoh,
    • Bogumil Kaczkowski,
    • Aditi Kanhere,
    • Emily Kawabata,
    • Hideya Kawaji,
    • Tsugumi Kawashima,
    • S. Thomas Kelly,
    • Miki Kojima,
    • Naoto Kondo,
    • Haruhiko Koseki,
    • Tsukasa Kouno,
    • Anton Kratz,
    • Mariola Kurowska-Stolarska,
    • Andrew Tae Jun Kwon,
    • Jeffrey Leek,
    • Andreas Lennartsson,
    • Marina Lizio,
    • Fernando López-Redondo,
    • Joachim Luginbühl,
    • Shiori Maeda,
    • Vsevolod J. Makeev,
    • Luigi Marchionni,
    • Yulia A. Medvedeva,
    • Aki Minoda,
    • Ferenc Müller,
    • Manuel Muñoz-Aguirre,
    • Mitsuyoshi Murata,
    • Hiromi Nishiyori,
    • Kazuhiro R. Nitta,
    • Shuhei Noguchi,
    • Yukihiko Noro,
    • Ramil Nurtdinov,
    • Yasushi Okazaki,
    • Valerio Orlando,
    • Denis Paquette,
    • Callum J.C. Parr,
    • Owen J.L. Rackham,
    • Patrizia Rizzu,
    • Diego Fernando Sánchez Martinez,
    • Albin Sandelin,
    • Pillay Sanjana,
    • Colin A.M. Semple,
    • Youtaro Shibayama,
    • Divya M. Sivaraman,
    • Takahiro Suzuki,
    • Suzannah C. Szumowski,
    • Michihira Tagami,
    • Martin S. Taylor,
    • Chikashi Terao,
    • Malte Thodberg,
    • Supat Thongjuea,
    • Vidisha Tripathi,
    • Igor Ulitsky,
    • Roberto Verardo,
    • Ilya E. Vorontsov,
    • Chinatsu Yamamoto,
    • Robert S. Young,
    • J. Kenneth Baillie,
    • Alistair R.R. Forrest,
    • Roderic Guigó,
    • Michael M. Hoffman,
    • Chung Chau Hon,
    • Takeya Kasukawa,
    • Sakari Kauppinen,
    • Juha Kere,
    • Boris Lenhard,
    • Claudio Schneider,
    • Harukazu Suzuki,
    • Ken Yagi,
    • Michiel J.L. de Hoon,
    • Jay W. Shin,
    • and Piero Carninci
    Genome Res. July 2020 30: 1060-1072; Published in Advance July 27, 2020, doi:10.1101/gr.254219.119
    OPEN ACCESS ARTICLE
  8. Corrigendum: Corrigendum: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development
    • Michal Pawlak,
    • Katarzyna Z. Kedzierska,
    • Maciej Migdal,
    • Karim Abu Nahia,
    • Jordan A. Ramilowski,
    • Lukasz Bugajski,
    • Kosuke Hashimoto,
    • Aleksandra Marconi,
    • Katarzyna Piwocka,
    • Piero Carninci,
    • and Cecilia L. Winata
    Genome Res. January 2020 30: 153_2; doi:10.1101/gr.260273.119
    OPEN ACCESS ARTICLE
  9. Resource: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development
    • Michal Pawlak,
    • Katarzyna Z. Kedzierska,
    • Maciej Migdal,
    • Karim Abu Nahia,
    • Jordan A. Ramilowski,
    • Lukasz Bugajski,
    • Kosuke Hashimoto,
    • Aleksandra Marconi,
    • Katarzyna Piwocka,
    • Piero Carninci,
    • and Cecilia L. Winata
    Genome Res. March 2019 29: 506-519; Published in Advance February 13, 2019, doi:10.1101/gr.244491.118
    OPEN ACCESS ARTICLE
  10. Method: SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA
    • Nevena Cvetesic,
    • Harry G. Leitch,
    • Malgorzata Borkowska,
    • Ferenc Müller,
    • Piero Carninci,
    • Petra Hajkova,
    • and Boris Lenhard
    Genome Res. December 2018 28: 1943-1956; Published in Advance November 7, 2018, doi:10.1101/gr.235937.118
    OPEN ACCESS ARTICLE
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