Searching journal content for Philipp Kapranov in author.

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  1. Method: Single-step capture and sequencing of natural DNA for detection of BRCA1 mutations
    • John F. Thompson,
    • Jeffrey G. Reifenberger,
    • Eldar Giladi,
    • Kristen Kerouac,
    • Jaime Gill,
    • Erik Hansen,
    • Avak Kahvejian,
    • Philipp Kapranov,
    • Travis Knope,
    • Doron Lipson,
    • Kathleen E. Steinmann,
    • and Patrice M. Milos
    Genome Res. February 2012 22: 340-345; Published in Advance July 15, 2011, doi:10.1101/gr.122192.111
  2. Method: True single-molecule DNA sequencing of a pleistocene horse bone
    • Ludovic Orlando,
    • Aurelien Ginolhac,
    • Maanasa Raghavan,
    • Julia Vilstrup,
    • Morten Rasmussen,
    • Kim Magnussen,
    • Kathleen E. Steinmann,
    • Philipp Kapranov,
    • John F. Thompson,
    • Grant Zazula,
    • Duane Froese,
    • Ida Moltke,
    • Beth Shapiro,
    • Michael Hofreiter,
    • Khaled A.S. Al-Rasheid,
    • M. Thomas P. Gilbert,
    • and Eske Willerslev
    Genome Res. October 2011 21: 1705-1719; Published in Advance July 29, 2011, doi:10.1101/gr.122747.111
  3. Resource: The transcriptional diversity of 25 Drosophila cell lines
    • Lucy Cherbas,
    • Aarron Willingham,
    • Dayu Zhang,
    • Li Yang,
    • Yi Zou,
    • Brian D. Eads,
    • Joseph W. Carlson,
    • Jane M. Landolin,
    • Philipp Kapranov,
    • Jacqueline Dumais,
    • Anastasia Samsonova,
    • Jeong-Hyeon Choi,
    • Johnny Roberts,
    • Carrie A. Davis,
    • Haixu Tang,
    • Marijke J. van Baren,
    • Srinka Ghosh,
    • Alexander Dobin,
    • Kim Bell,
    • Wei Lin,
    • Laura Langton,
    • Michael O. Duff,
    • Aaron E. Tenney,
    • Chris Zaleski,
    • Michael R. Brent,
    • Roger A. Hoskins,
    • Thomas C. Kaufman,
    • Justen Andrews,
    • Brenton R. Graveley,
    • Norbert Perrimon,
    • Susan E. Celniker,
    • Thomas R. Gingeras,
    • and Peter Cherbas
    Genome Res. February 2011 21: 301-314; Published in Advance December 22, 2010, doi:10.1101/gr.112961.110
    OPEN ACCESS ARTICLE
  4. LETTER: Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders
    • Alvaro Rada-Iglesias,
    • Adam Ameur,
    • Philipp Kapranov,
    • Stefan Enroth,
    • Jan Komorowski,
    • Thomas R. Gingeras,
    • and Claes Wadelius
    Genome Res. March 2008 18: 380-392; Published in Advance January 29, 2008, doi:10.1101/gr.6880908
  5. LETTER: Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    • David S. Johnson,
    • Wei Li,
    • D. Benjamin Gordon,
    • Arindam Bhattacharjee,
    • Bo Curry,
    • Jayati Ghosh,
    • Leonardo Brizuela,
    • Jason S. Carroll,
    • Myles Brown,
    • Paul Flicek,
    • Christoph M. Koch,
    • Ian Dunham,
    • Mark Bieda,
    • Xiaoqin Xu,
    • Peggy J. Farnham,
    • Philipp Kapranov,
    • David A. Nix,
    • Thomas R. Gingeras,
    • Xinmin Zhang,
    • Heather Holster,
    • Nan Jiang,
    • Roland D. Green,
    • Jun S. Song,
    • Scott A. McCuine,
    • Elizabeth Anton,
    • Loan Nguyen,
    • Nathan D. Trinklein,
    • Zhen Ye,
    • Keith Ching,
    • David Hawkins,
    • Bing Ren,
    • Peter C. Scacheri,
    • Joel Rozowsky,
    • Alexander Karpikov,
    • Ghia Euskirchen,
    • Sherman Weissman,
    • Mark Gerstein,
    • Michael Snyder,
    • Annie Yang,
    • Zarmik Moqtaderi,
    • Heather Hirsch,
    • Hennady P. Shulha,
    • Yutao Fu,
    • Zhiping Weng,
    • Kevin Struhl,
    • Richard M. Myers,
    • Jason D. Lieb,
    • and X. Shirley Liu
    Genome Res. March 2008 18: 393-403; Published in Advance February 7, 2008, doi:10.1101/gr.7080508
  6. ARTICLE: Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
    • France Denoeud,
    • Philipp Kapranov,
    • Catherine Ucla,
    • Adam Frankish,
    • Robert Castelo,
    • Jorg Drenkow,
    • Julien Lagarde,
    • Tyler Alioto,
    • Caroline Manzano,
    • Jacqueline Chrast,
    • Sujit Dike,
    • Carine Wyss,
    • Charlotte N. Henrichsen,
    • Nancy Holroyd,
    • Mark C. Dickson,
    • Ruth Taylor,
    • Zahra Hance,
    • Sylvain Foissac,
    • Richard M. Myers,
    • Jane Rogers,
    • Tim Hubbard,
    • Jennifer Harrow,
    • Roderic Guigó,
    • Thomas R. Gingeras,
    • Stylianos E. Antonarakis,
    • and Alexandre Reymond
    Genome Res. June 2007 17: 746-759; doi:10.1101/gr.5660607
    OPEN ACCESS ARTICLE
  7. LETTER: Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
    • Deyou Zheng,
    • Adam Frankish,
    • Robert Baertsch,
    • Philipp Kapranov,
    • Alexandre Reymond,
    • Siew Woh Choo,
    • Yontao Lu,
    • France Denoeud,
    • Stylianos E. Antonarakis,
    • Michael Snyder,
    • Yijun Ruan,
    • Chia-Lin Wei,
    • Thomas R. Gingeras,
    • Roderic Guigó,
    • Jennifer Harrow,
    • and Mark B. Gerstein
    Genome Res. June 2007 17: 839-851; doi:10.1101/gr.5586307
    OPEN ACCESS ARTICLE
  8. LETTER: Structured RNAs in the ENCODE selected regions of the human genome
    • Stefan Washietl,
    • Jakob S. Pedersen,
    • Jan O. Korbel,
    • Claudia Stocsits,
    • Andreas R. Gruber,
    • Jörg Hackermüller,
    • Jana Hertel,
    • Manja Lindemeyer,
    • Kristin Reiche,
    • Andrea Tanzer,
    • Catherine Ucla,
    • Carine Wyss,
    • Stylianos E. Antonarakis,
    • France Denoeud,
    • Julien Lagarde,
    • Jorg Drenkow,
    • Philipp Kapranov,
    • Thomas R. Gingeras,
    • Roderic Guigó,
    • Michael Snyder,
    • Mark B. Gerstein,
    • Alexandre Reymond,
    • Ivo L. Hofacker,
    • and Peter F. Stadler
    Genome Res. June 2007 17: 852-864; doi:10.1101/gr.5650707
    OPEN ACCESS ARTICLE
  9. Methods: Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays
    • Philipp Kapranov,
    • Jorg Drenkow,
    • Jill Cheng,
    • Jeffrey Long,
    • Gregg Helt,
    • Sujit Dike,
    • and Thomas R. Gingeras
    Genome Res. July 2005 15: 987-997; doi:10.1101/gr.3455305
  10. ARTICLE: Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22
    • Dione Kampa,
    • Jill Cheng,
    • Philipp Kapranov,
    • Mark Yamanaka,
    • Shane Brubaker,
    • Simon Cawley,
    • Jorg Drenkow,
    • Antonio Piccolboni,
    • Stefan Bekiranov,
    • Gregg Helt,
    • Hari Tammana,
    • and Thomas R. Gingeras
    Genome Res. March 2004 14: 331-342; doi:10.1101/gr.2094104
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