Searching journal content for Peter V. Kharchenko in author.

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  1. Method: Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data
    • Jean Fan,
    • Hae-Ock Lee,
    • Soohyun Lee,
    • Da-eun Ryu,
    • Semin Lee,
    • Catherine Xue,
    • Seok Jin Kim,
    • Kihyun Kim,
    • Nikolaos Barkas,
    • Peter J. Park,
    • Woong-Yang Park,
    • and Peter V. Kharchenko
    Genome Res. August 2018 28: 1217-1227; Published in Advance June 13, 2018, doi:10.1101/gr.228080.117
  2. Research: Integrated single-cell genetic and transcriptional analysis suggests novel drivers of chronic lymphocytic leukemia
    • Lili Wang,
    • Jean Fan,
    • Joshua M. Francis,
    • George Georghiou,
    • Sarah Hergert,
    • Shuqiang Li,
    • Rutendo Gambe,
    • Chensheng W. Zhou,
    • Chunxiao Yang,
    • Sheng Xiao,
    • Paola Dal Cin,
    • Michaela Bowden,
    • Dylan Kotliar,
    • Sachet A. Shukla,
    • Jennifer R. Brown,
    • Donna Neuberg,
    • Dario R. Alessi,
    • Cheng-Zhong Zhang,
    • Peter V. Kharchenko,
    • Kenneth J. Livak,
    • and Catherine J. Wu
    Genome Res. August 2017 27: 1300-1311; Published in Advance July 5, 2017, doi:10.1101/gr.217331.116
  3. Research: Nature and function of insulator protein binding sites in the Drosophila genome
    • Yuri B. Schwartz,
    • Daniela Linder-Basso,
    • Peter V. Kharchenko,
    • Michael Y. Tolstorukov,
    • Maria Kim,
    • Hua-Bing Li,
    • Andrey A. Gorchakov,
    • Aki Minoda,
    • Gregory Shanower,
    • Artyom A. Alekseyenko,
    • Nicole C. Riddle,
    • Youngsook L. Jung,
    • Tingting Gu,
    • Annette Plachetka,
    • Sarah C.R. Elgin,
    • Mitzi I. Kuroda,
    • Peter J. Park,
    • Mikhail Savitsky,
    • Gary H. Karpen,
    • and Vincenzo Pirrotta
    Genome Res. November 2012 22: 2188-2198; Published in Advance July 5, 2012, doi:10.1101/gr.138156.112
  4. Resource: ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
    • Stephen G. Landt,
    • Georgi K. Marinov,
    • Anshul Kundaje,
    • Pouya Kheradpour,
    • Florencia Pauli,
    • Serafim Batzoglou,
    • Bradley E. Bernstein,
    • Peter Bickel,
    • James B. Brown,
    • Philip Cayting,
    • Yiwen Chen,
    • Gilberto DeSalvo,
    • Charles Epstein,
    • Katherine I. Fisher-Aylor,
    • Ghia Euskirchen,
    • Mark Gerstein,
    • Jason Gertz,
    • Alexander J. Hartemink,
    • Michael M. Hoffman,
    • Vishwanath R. Iyer,
    • Youngsook L. Jung,
    • Subhradip Karmakar,
    • Manolis Kellis,
    • Peter V. Kharchenko,
    • Qunhua Li,
    • Tao Liu,
    • X. Shirley Liu,
    • Lijia Ma,
    • Aleksandar Milosavljevic,
    • Richard M. Myers,
    • Peter J. Park,
    • Michael J. Pazin,
    • Marc D. Perry,
    • Debasish Raha,
    • Timothy E. Reddy,
    • Joel Rozowsky,
    • Noam Shoresh,
    • Arend Sidow,
    • Matthew Slattery,
    • John A. Stamatoyannopoulos,
    • Michael Y. Tolstorukov,
    • Kevin P. White,
    • Simon Xi,
    • Peggy J. Farnham,
    • Jason D. Lieb,
    • Barbara J. Wold,
    • and Michael Snyder
    Genome Res. September 2012 22: 1813-1831; doi:10.1101/gr.136184.111
    OPEN ACCESS ARTICLE
  5. Research: Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin
    • Nicole C. Riddle,
    • Aki Minoda,
    • Peter V. Kharchenko,
    • Artyom A. Alekseyenko,
    • Yuri B. Schwartz,
    • Michael Y. Tolstorukov,
    • Andrey A. Gorchakov,
    • Jacob D. Jaffe,
    • Cameron Kennedy,
    • Daniela Linder-Basso,
    • Sally E. Peach,
    • Gregory Shanower,
    • Haiyan Zheng,
    • Mitzi I. Kuroda,
    • Vincenzo Pirrotta,
    • Peter J. Park,
    • Sarah C.R. Elgin,
    • and Gary H. Karpen
    Genome Res. February 2011 21: 147-163; Published in Advance December 22, 2010, doi:10.1101/gr.110098.110
  6. Research: Chromatin signatures of the Drosophila replication program
    • Matthew L. Eaton,
    • Joseph A. Prinz,
    • Heather K. MacAlpine,
    • George Tretyakov,
    • Peter V. Kharchenko,
    • and David M. MacAlpine
    Genome Res. February 2011 21: 164-174; Published in Advance December 22, 2010, doi:10.1101/gr.116038.110
    OPEN ACCESS ARTICLE
  7. Letter: Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes
    • Michael Y. Tolstorukov,
    • Peter V. Kharchenko,
    • Joseph A. Goldman,
    • Robert E. Kingston,
    • and Peter J. Park
    Genome Res. June 2009 19: 967-977; Published in Advance February 26, 2009, doi:10.1101/gr.084830.108
  8. LETTER: Nucleosome positioning in human HOX gene clusters
    • Peter V. Kharchenko,
    • Caroline J. Woo,
    • Michael Y. Tolstorukov,
    • Robert E. Kingston,
    • and Peter J. Park
    Genome Res. October 2008 18: 1554-1561; Published in Advance August 22, 2008, doi:10.1101/gr.075952.107
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