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Research: The rate and spectrum of new mutations in mice inferred by long-read sequencing

Eugenio López-Cortegano,
Jobran Chebib,
Anika Jonas,
Anastasia Vock,
Sven Künzel,
Peter D. Keightley,
and Diethard Tautz

Genome Res. January 2025 35: 43-54; Published in Advance December 2, 2024, doi:10.1101/gr.279982.124

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Research: Variation in mutation, recombination, and transposition rates in Drosophila melanogaster and Drosophila simulans

Yiguan Wang,
Paul McNeil,
Rashidatu Abdulazeez,
Marta Pascual,
Susan E. Johnston,
Peter D. Keightley,
and Darren J. Obbard

Genome Res. April 2023 33: 587-598; Published in Advance April 10, 2023, doi:10.1101/gr.277383.122

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Research: Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii

Eugenio López-Cortegano,
Rory J. Craig,
Jobran Chebib,
Eniolaye J. Balogun,
and Peter D. Keightley

Genome Res. January 2023 33: 45-60; Published in Advance December 12, 2022, doi:10.1101/gr.276957.122

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Research: Extensive de novo mutation rate variation between individuals and across the genome of Chlamydomonas reinhardtii

Rob W. Ness,
Andrew D. Morgan,
Radhakrishnan B. Vasanthakrishnan,
Nick Colegrave,
and Peter D. Keightley

Genome Res. November 2015 25: 1739-1749; Published in Advance August 10, 2015, doi:10.1101/gr.191494.115

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Letter: Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

Peter D. Keightley,
Urmi Trivedi,
Marian Thomson,
Fiona Oliver,
Sujai Kumar,
and Mark L. Blaxter

Genome Res. July 2009 19: 1195-1201; Published in Advance May 13, 2009, doi:10.1101/gr.091231.109

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LETTER: Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison

Daniel L. Halligan and
Peter D. Keightley

Genome Res. July 2006 16: 875-884; Published in Advance June 2, 2006, doi:10.1101/gr.5022906

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LETTER: Evolutionary constraints in conserved nongenic sequences of mammals

Peter D. Keightley,
Gregory V. Kryukov,
Shamil Sunyaev,
Daniel L. Halligan,
and Daniel J. Gaffney

Genome Res. October 2005 15: 1373-1378; doi:10.1101/gr.3942005

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LETTER: The scale of mutational variation in the murid genome

Daniel J. Gaffney and
Peter D. Keightley

Genome Res. August 2005 15: 1086-1094; Published in Advance July 15, 2005, doi:10.1101/gr.3895005

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Methods: MCALIGN: Stochastic Alignment of Noncoding DNA Sequences Based on an Evolutionary Model of Sequence Evolution

Peter D. Keightley and
Toby Johnson

Genome Res. March 2004 14: 442-450; doi:10.1101/gr.1571904

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LETTER: Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila

Daniel L. Halligan,
Adam Eyre-Walker,
Peter Andolfatto,
and Peter D. Keightley

Genome Res. February 2004 14: 273-279; doi:10.1101/gr.1329204

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