Searching journal content for Pavel A. Pevzner in author.

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  1. Method: Analyzing rare mutations in metagenomes assembled using long and accurate reads
    • Marcus W. Fedarko,
    • Mikhail Kolmogorov,
    • and Pavel A. Pevzner
    Genome Res. November/December 2022 32: 2119-2133; Published in Advance November 23, 2022, doi:10.1101/gr.276917.122
  2. Method: Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
    • Andrey V. Bzikadze,
    • Alla Mikheenko,
    • and Pavel A. Pevzner
    Genome Res. November/December 2022 32: 2107-2118; Published in Advance November 15, 2022, doi:10.1101/gr.276871.122
  3. Method: Automated annotation of human centromeres with HORmon
    • Olga Kunyavskaya,
    • Tatiana Dvorkina,
    • Andrey V. Bzikadze,
    • Ivan A. Alexandrov,
    • and Pavel A. Pevzner
    Genome Res. June 2022 32: 1137-1151; Published in Advance May 11, 2022, doi:10.1101/gr.276362.121
  4. Method: Gene prediction in the immunoglobulin loci
    • Vikram Sirupurapu,
    • Yana Safonova,
    • and Pavel A. Pevzner
    Genome Res. June 2022 32: 1152-1169; Published in Advance May 11, 2022, doi:10.1101/gr.276676.122
  5. Method: Variations in antibody repertoires correlate with vaccine responses
    • Yana Safonova,
    • Sung Bong Shin,
    • Luke Kramer,
    • James Reecy,
    • Corey T. Watson,
    • Timothy P.L. Smith,
    • and Pavel A. Pevzner
    Genome Res. April 2022 32: 791-804; Published in Advance March 31, 2022, doi:10.1101/gr.276027.121
  6. Erratum: Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
    • Zhoutao Chen,
    • Long Pham,
    • Tsai-Chin Wu,
    • Guoya Mo,
    • Yu Xia,
    • Peter L. Chang,
    • Devin Porter,
    • Tan Phan,
    • Huu Che,
    • Hao Tran,
    • Vikas Bansal,
    • Justin Shaffer,
    • Pedro Belda-Ferre,
    • Greg Humphrey,
    • Rob Knight,
    • Pavel Pevzner,
    • Son Pham,
    • Yong Wang,
    • and Ming Lei
    Genome Res. May 2021 31: 934; doi:10.1101/gr.275614.121
    OPEN ACCESS ARTICLE
  7. Research: V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s
    • Yana Safonova and
    • Pavel A. Pevzner
    Genome Res. November 2020 30: 1547-1558; Published in Advance September 18, 2020, doi:10.1101/gr.259598.119
  8. Method: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information
    • Zhoutao Chen,
    • Long Pham,
    • Tsai-Chin Wu,
    • Guoya Mo,
    • Yu Xia,
    • Peter L. Chang,
    • Devin Porter,
    • Tan Phan,
    • Huu Che,
    • Hao Tran,
    • Vikas Bansal,
    • Justin Shaffer,
    • Pedro Belda-Ferre,
    • Greg Humphrey,
    • Rob Knight,
    • Pavel Pevzner,
    • Son Pham,
    • Yong Wang,
    • and Ming Lei
    Genome Res. June 2020 30: 898-909; Published in Advance June 15, 2020, doi:10.1101/gr.260380.119
  9. Method: BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs
    • Dmitry Meleshko,
    • Hosein Mohimani,
    • Vittorio Tracanna,
    • Iman Hajirasouliha,
    • Marnix H. Medema,
    • Anton Korobeynikov,
    • and Pavel A. Pevzner
    Genome Res. August 2019 29: 1352-1362; Published in Advance June 3, 2019, doi:10.1101/gr.243477.118
  10. Method: Plasmid detection and assembly in genomic and metagenomic data sets
    • Dmitry Antipov,
    • Mikhail Raiko,
    • Alla Lapidus,
    • and Pavel A. Pevzner
    Genome Res. June 2019 29: 961-968; Published in Advance May 2, 2019, doi:10.1101/gr.241299.118
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