Searching journal content for Paul Flicek in author.

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  1. Research: Gaps and complex structurally variant loci in phased genome assemblies
    • David Porubsky,
    • Mitchell R. Vollger,
    • William T. Harvey,
    • Allison N. Rozanski,
    • Peter Ebert,
    • Glenn Hickey,
    • Patrick Hasenfeld,
    • Ashley D. Sanders,
    • Catherine Stober,
    • Human Pangenome Reference Consortium,
    • Jan O. Korbel,
    • Benedict Paten,
    • Tobias Marschall,
    • and Evan E. Eichler
    Genome Res. April 2023 33: 496-510; Published in Advance May 10, 2023, doi:10.1101/gr.277334.122
    OPEN ACCESS ARTICLE
  2. Research: Diversity, duplication, and genomic organization of homeobox genes in Lepidoptera
    • Peter O. Mulhair,
    • Liam Crowley,
    • Douglas H. Boyes,
    • Amber Harper,
    • Owen T. Lewis,
    • Darwin Tree of Life Consortium,
    • and Peter W.H. Holland
    Genome Res. January 2023 33: 32-44; Published in Advance December 8, 2022, doi:10.1101/gr.277118.122
    OPEN ACCESS ARTICLE
  3. Research: Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma
    • Raquel Ordoñez,
    • Marta Kulis,
    • Nuria Russiñol,
    • Vicente Chapaprieta,
    • Arantxa Carrasco-Leon,
    • Beatriz García-Torre,
    • Stella Charalampopoulou,
    • Guillem Clot,
    • Renée Beekman,
    • Cem Meydan,
    • Martí Duran-Ferrer,
    • Núria Verdaguer-Dot,
    • Roser Vilarrasa-Blasi,
    • Paula Soler-Vila,
    • Leire Garate,
    • Estíbaliz Miranda,
    • Edurne San José-Enériz,
    • Juan R. Rodriguez-Madoz,
    • Teresa Ezponda,
    • Rebeca Martínez-Turrilas,
    • Amaia Vilas-Zornoza,
    • David Lara-Astiaso,
    • Daphné Dupéré-Richer,
    • Joost H.A. Martens,
    • Halima El-Omri,
    • Ruba Y. Taha,
    • Maria J. Calasanz,
    • Bruno Paiva,
    • Jesus San Miguel,
    • Paul Flicek,
    • Ivo Gut,
    • Ari Melnick,
    • Constantine S. Mitsiades,
    • Jonathan D. Licht,
    • Elias Campo,
    • Hendrik G. Stunnenberg,
    • Xabier Agirre,
    • Felipe Prosper,
    • and Jose I. Martin-Subero
    Genome Res. September 2020 30: 1217-1227; Published in Advance August 20, 2020, doi:10.1101/gr.265520.120
    OPEN ACCESS ARTICLE
  4. Resource: A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection
    • Mats E. Pettersson,
    • Christina M. Rochus,
    • Fan Han,
    • Junfeng Chen,
    • Jason Hill,
    • Ola Wallerman,
    • Guangyi Fan,
    • Xiaoning Hong,
    • Qiwu Xu,
    • He Zhang,
    • Shanshan Liu,
    • Xin Liu,
    • Leanne Haggerty,
    • Toby Hunt,
    • Fergal J. Martin,
    • Paul Flicek,
    • Ignas Bunikis,
    • Arild Folkvord,
    • and Leif Andersson
    Genome Res. November 2019 29: 1919-1928; Published in Advance October 24, 2019, doi:10.1101/gr.253435.119
    OPEN ACCESS ARTICLE
  5. Method: Chromosome assembly of large and complex genomes using multiple references
    • Mikhail Kolmogorov,
    • Joel Armstrong,
    • Brian J. Raney,
    • Ian Streeter,
    • Matthew Dunn,
    • Fengtang Yang,
    • Duncan Odom,
    • Paul Flicek,
    • Thomas M. Keane,
    • David Thybert,
    • Benedict Paten,
    • and Son Pham
    Genome Res. November 2018 28: 1720-1732; Published in Advance October 19, 2018, doi:10.1101/gr.236273.118
    OPEN ACCESS ARTICLE
  6. Research: Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes
    • David Thybert,
    • Maša Roller,
    • Fábio C.P. Navarro,
    • Ian Fiddes,
    • Ian Streeter,
    • Christine Feig,
    • David Martin-Galvez,
    • Mikhail Kolmogorov,
    • Václav Janoušek,
    • Wasiu Akanni,
    • Bronwen Aken,
    • Sarah Aldridge,
    • Varshith Chakrapani,
    • William Chow,
    • Laura Clarke,
    • Carla Cummins,
    • Anthony Doran,
    • Matthew Dunn,
    • Leo Goodstadt,
    • Kerstin Howe,
    • Matthew Howell,
    • Ambre-Aurore Josselin,
    • Robert C. Karn,
    • Christina M. Laukaitis,
    • Lilue Jingtao,
    • Fergal Martin,
    • Matthieu Muffato,
    • Stefanie Nachtweide,
    • Michael A. Quail,
    • Cristina Sisu,
    • Mario Stanke,
    • Klara Stefflova,
    • Cock Van Oosterhout,
    • Frederic Veyrunes,
    • Ben Ward,
    • Fengtang Yang,
    • Golbahar Yazdanifar,
    • Amonida Zadissa,
    • David J. Adams,
    • Alvis Brazma,
    • Mark Gerstein,
    • Benedict Paten,
    • Son Pham,
    • Thomas M. Keane,
    • Duncan T. Odom,
    • and Paul Flicek
    Genome Res. April 2018 28: 448-459; Published in Advance March 21, 2018, doi:10.1101/gr.234096.117
    OPEN ACCESS ARTICLE
  7. Corrigendum: Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal
    • Juan L. Mateo,
    • Debbie L.C. van den Berg,
    • Maximilian Haeussler,
    • Daniela Drechsel,
    • Zachary B. Gaber,
    • Diogo S. Castro,
    • Paul Robson,
    • Q. Richard Lu,
    • Gregory E. Crawford,
    • Paul Flicek,
    • Laurence Ettwiller,
    • Joachim Wittbrodt,
    • François Guillemot,
    • and Ben Martynoga
    Genome Res. December 2017 27: 2129; doi:10.1101/gr.231845.117
    OPEN ACCESS ARTICLE
  8. Method: Co-expression networks reveal the tissue-specific regulation of transcription and splicing
    • Ashis Saha,
    • Yungil Kim,
    • Ariel D.H. Gewirtz,
    • Brian Jo,
    • Chuan Gao,
    • Ian C. McDowell,
    • The GTEx Consortium,
    • Barbara E. Engelhardt,
    • and Alexis Battle
    Genome Res. November 2017 27: 1843-1858; Published in Advance October 11, 2017, doi:10.1101/gr.216721.116
    OPEN ACCESS ARTICLE
  9. Method: Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
    • Fan Yang,
    • Jiebiao Wang,
    • The GTEx Consortium,
    • Brandon L. Pierce,
    • and Lin S. Chen
    Genome Res. November 2017 27: 1859-1871; Published in Advance October 11, 2017, doi:10.1101/gr.216754.116
  10. Resource: Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
    • Valerie A. Schneider,
    • Tina Graves-Lindsay,
    • Kerstin Howe,
    • Nathan Bouk,
    • Hsiu-Chuan Chen,
    • Paul A. Kitts,
    • Terence D. Murphy,
    • Kim D. Pruitt,
    • Françoise Thibaud-Nissen,
    • Derek Albracht,
    • Robert S. Fulton,
    • Milinn Kremitzki,
    • Vincent Magrini,
    • Chris Markovic,
    • Sean McGrath,
    • Karyn Meltz Steinberg,
    • Kate Auger,
    • William Chow,
    • Joanna Collins,
    • Glenn Harden,
    • Timothy Hubbard,
    • Sarah Pelan,
    • Jared T. Simpson,
    • Glen Threadgold,
    • James Torrance,
    • Jonathan M. Wood,
    • Laura Clarke,
    • Sergey Koren,
    • Matthew Boitano,
    • Paul Peluso,
    • Heng Li,
    • Chen-Shan Chin,
    • Adam M. Phillippy,
    • Richard Durbin,
    • Richard K. Wilson,
    • Paul Flicek,
    • Evan E. Eichler,
    • and Deanna M. Church
    Genome Res. May 2017 27: 849-864; Published in Advance April 10, 2017, doi:10.1101/gr.213611.116
    OPEN ACCESS ARTICLE
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