Searching journal content for Pamela J. Thomas in author.

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  1. Research: Highly complete long-read genomes reveal pangenomic variation underlying yeast phenotypic diversity
    • Cory A. Weller,
    • Ilya Andreev,
    • Michael J. Chambers,
    • Morgan Park,
    • NISC Comparative Sequencing Program,
    • Joshua S. Bloom,
    • and Meru J. Sadhu
    Genome Res. May 2023 33: 729-740; Published in Advance May 1, 2023, doi:10.1101/gr.277515.122
  2. Research: Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genes
    • Tongwu Zhang,
    • Jiyeon Choi,
    • Michael A. Kovacs,
    • Jianxin Shi,
    • Mai Xu,
    • NISC Comparative Sequencing Program,
    • Melanoma Meta-Analysis Consortium,
    • Alisa M. Goldstein,
    • Adam J. Trower,
    • D. Timothy Bishop,
    • Mark M. Iles,
    • David L. Duffy,
    • Stuart MacGregor,
    • Laufey T. Amundadottir,
    • Matthew H. Law,
    • Stacie K. Loftus,
    • William J. Pavan,
    • and Kevin M. Brown
    Genome Res. November 2018 28: 1621-1635; Published in Advance October 17, 2018, doi:10.1101/gr.233304.117
  3. ARTICLE: Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
    • Elliott H. Margulies,
    • Gregory M. Cooper,
    • George Asimenos,
    • Daryl J. Thomas,
    • Colin N. Dewey,
    • Adam Siepel,
    • Ewan Birney,
    • Damian Keefe,
    • Ariel S. Schwartz,
    • Minmei Hou,
    • James Taylor,
    • Sergey Nikolaev,
    • Juan I. Montoya-Burgos,
    • Ari Löytynoja,
    • Simon Whelan,
    • Fabio Pardi,
    • Tim Massingham,
    • James B. Brown,
    • Peter Bickel,
    • Ian Holmes,
    • James C. Mullikin,
    • Abel Ureta-Vidal,
    • Benedict Paten,
    • Eric A. Stone,
    • Kate R. Rosenbloom,
    • W. James Kent,
    • Gerard G. Bouffard,
    • Xiaobin Guan,
    • Nancy F. Hansen,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Baishali Maskeri,
    • Jennifer C. McDowell,
    • Morgan Park,
    • Pamela J. Thomas,
    • Alice C. Young,
    • Robert W. Blakesley,
    • Donna M. Muzny,
    • Erica Sodergren,
    • David A. Wheeler,
    • Kim C. Worley,
    • Huaiyang Jiang,
    • George M. Weinstock,
    • Richard A. Gibbs,
    • Tina Graves,
    • Robert Fulton,
    • Elaine R. Mardis,
    • Richard K. Wilson,
    • Michele Clamp,
    • James Cuff,
    • Sante Gnerre,
    • David B. Jaffe,
    • Jean L. Chang,
    • Kerstin Lindblad-Toh,
    • Eric S. Lander,
    • Angie Hinrichs,
    • Heather Trumbower,
    • Hiram Clawson,
    • Ann Zweig,
    • Robert M. Kuhn,
    • Galt Barber,
    • Rachel Harte,
    • Donna Karolchik,
    • Matthew A. Field,
    • Richard A. Moore,
    • Carrie A. Matthewson,
    • Jacqueline E. Schein,
    • Marco A. Marra,
    • Stylianos E. Antonarakis,
    • Serafim Batzoglou,
    • Nick Goldman,
    • Ross Hardison,
    • David Haussler,
    • Webb Miller,
    • Lior Pachter,
    • Eric D. Green,
    • and Arend Sidow
    Genome Res. June 2007 17: 760-774; doi:10.1101/gr.6034307
    OPEN ACCESS ARTICLE
  4. LETTER: An intermediate grade of finished genomic sequence suitable for comparative analyses
    • Robert W. Blakesley,
    • Nancy F. Hansen,
    • James C. Mullikin,
    • Pamela J. Thomas,
    • Jennifer C. McDowell,
    • Baishali Maskeri,
    • Alice C. Young,
    • Beatrice Benjamin,
    • Shelise Y. Brooks,
    • Bradley I. Coleman,
    • Jyoti Gupta,
    • Shi-Ling Ho,
    • Eric M. Karlins,
    • Quino L. Maduro,
    • Sirintorn Stantripop,
    • Cyrus Tsurgeon,
    • Jennifer L. Vogt,
    • Michelle A. Walker,
    • Catherine A. Masiello,
    • Xiaobin Guan,
    • NISC Comparative Sequencing Program,
    • Gerard G. Bouffard,
    • and Eric D. Green
    Genome Res. November 2004 14: 2235-2244; Published in Advance October 12, 2004, doi:10.1101/gr.2648404
  5. LETTER: Pericentromeric Duplications in the Laboratory Mouse
    • James W. Thomas,
    • Mary G. Schueler,
    • Tyrone J. Summers,
    • Robert W. Blakesley,
    • Jennifer C. McDowell,
    • Pamela J. Thomas,
    • Jacquelyn R. Idol,
    • Valerie V.B. Maduro,
    • Shih-Queen Lee-Lin,
    • Jeffrey W. Touchman,
    • Gerard G. Bouffard,
    • Stephen M. Beckstrom-Sternberg,
    • NISC Comparative Sequencing Program,
    • and Eric D. Green
    Genome Res. January 1, 2003 13: 55-63; Published in Advance December 30, 2002, doi:10.1101/gr.791403
  6. METHODS: Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species
    • James W. Thomas,
    • Arjun B. Prasad,
    • Tyrone J. Summers,
    • Shih-Queen Lee-Lin,
    • Valerie V.B. Maduro,
    • Jacquelyn R. Idol,
    • Joseph F. Ryan,
    • Pamela J. Thomas,
    • Jennifer C. McDowell,
    • and Eric D. Green
    Genome Res. August 1, 2002 12: 1277-1285; doi:10.1101/gr.283202
  7. REPORT: Generation and Comparative Analysis of ∼3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome
    • Udaya DeSilva,
    • Laura Elnitski,
    • Jacquelyn R. Idol,
    • Johannah L. Doyle,
    • Weiniu Gan,
    • James W. Thomas,
    • Scott Schwartz,
    • Nicole L. Dietrich,
    • Stephen M. Beckstrom-Sternberg,
    • Jennifer C. McDowell,
    • Robert W. Blakesley,
    • Gerard G. Bouffard,
    • Pamela J. Thomas,
    • Jeffrey W. Touchman,
    • Webb Miller,
    • and Eric D. Green
    Genome Res. January 1, 2002 12: 3-15; doi:10.1101/gr.214802
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