Searching journal content for P. Paul Liu in author.

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  1. Corrigendum: Corrigendum: Cre-dependent Cas9-expressing pigs enable efficient in vivo genome editing
    • Kepin Wang,
    • Qin Jin,
    • Degong Ruan,
    • Yi Yang,
    • Qishuai Liu,
    • Han Wu,
    • Zhiwei Zhou,
    • Zhen Ouyang,
    • Zhaoming Liu,
    • Yu Zhao,
    • Bentian Zhao,
    • Quanjun Zhang,
    • Jiangyun Peng,
    • Chengdan Lai,
    • Nana Fan,
    • Yanhui Liang,
    • Ting Lan,
    • Nan Li,
    • Xiaoshan Wang,
    • Xinlu Wang,
    • Yong Fan,
    • Pieter A. Doevendans,
    • Joost P.G. Sluijter,
    • Pentao Liu,
    • Xiaoping Li,
    • and Liangxue Lai
    Genome Res. June 2025 35: 1472-2; doi:10.1101/gr.280849.125
    OPEN ACCESS ARTICLE
  2. Research: Leveraging the T2T assembly to resolve rare and pathogenic inversions in reference genome gaps
    • Kristine Bilgrav Saether,
    • Jesper Eisfeldt,
    • Jesse D. Bengtsson,
    • Ming Yin Lun,
    • Christopher M. Grochowski,
    • Medhat Mahmoud,
    • Hsiao-Tuan Chao,
    • Jill A. Rosenfeld,
    • Pengfei Liu,
    • Marlene Ek,
    • Jakob Schuy,
    • Adam Ameur,
    • Hongzheng Dai,
    • Undiagnosed Diseases Network,
    • James Paul Hwang,
    • Fritz J. Sedlazeck,
    • Weimin Bi,
    • Ronit Marom,
    • Josephine Wincent,
    • Ann Nordgren,
    • Claudia M.B. Carvalho,
    • and Anna Lindstrand
    Genome Res. November 2024 34: 1785-1797; Published in Advance November 1, 2024, doi:10.1101/gr.279346.124
    OPEN ACCESS ARTICLE
  3. Resource: Haplotype-resolved 3D chromatin architecture of the hybrid pig
    • Yu Lin,
    • Jing Li,
    • Yiren Gu,
    • Long Jin,
    • Jingyi Bai,
    • Jiaman Zhang,
    • Yujie Wang,
    • Pengliang Liu,
    • Keren Long,
    • Mengnan He,
    • Diyan Li,
    • Can Liu,
    • Ziyin Han,
    • Yu Zhang,
    • Xiaokai Li,
    • Bo Zeng,
    • Lu Lu,
    • Fanli Kong,
    • Ying Sun,
    • Yongliang Fan,
    • Xun Wang,
    • Tao Wang,
    • An'an Jiang,
    • Jideng Ma,
    • Linyuan Shen,
    • Li Zhu,
    • Yanzhi Jiang,
    • Guoqing Tang,
    • Xiaolan Fan,
    • Qingyou Liu,
    • Hua Li,
    • Jinyong Wang,
    • Li Chen,
    • Liangpeng Ge,
    • Xuewei Li,
    • Qianzi Tang,
    • and Mingzhou Li
    Genome Res. February 2024 34: 310-325; Published in Advance March 13, 2024, doi:10.1101/gr.278101.123
    OPEN ACCESS ARTICLE
  4. Method: Ultrafast functional profiling of RNA-seq data for nonmodel organisms
    • Peng Liu,
    • Jessica Ewald,
    • Jose Hector Galvez,
    • Jessica Head,
    • Doug Crump,
    • Guillaume Bourque,
    • Niladri Basu,
    • and Jianguo Xia
    Genome Res. April 2021 31: 713-720; Published in Advance March 17, 2021, doi:10.1101/gr.269894.120
    OPEN ACCESS ARTICLE
  5. Method: PRAM: a novel pooling approach for discovering intergenic transcripts from large-scale RNA sequencing experiments
    • Peng Liu,
    • Alexandra A. Soukup,
    • Emery H. Bresnick,
    • Colin N. Dewey,
    • and Sündüz Keleş
    Genome Res. November 2020 30: 1655-1666; Published in Advance September 21, 2020, doi:10.1101/gr.252445.119
    OPEN ACCESS ARTICLE
  6. Method: HD-Marker: a highly multiplexed and flexible approach for targeted genotyping of more than 10,000 genes in a single-tube assay
    • Jia Lv,
    • Wenqian Jiao,
    • Haobing Guo,
    • Pingping Liu,
    • Ruijia Wang,
    • Lingling Zhang,
    • Qifan Zeng,
    • Xiaoli Hu,
    • Zhenmin Bao,
    • and Shi Wang
    Genome Res. December 2018 28: 1919-1930; Published in Advance November 8, 2018, doi:10.1101/gr.235820.118
    OPEN ACCESS ARTICLE
  7. Method: Cre-dependent Cas9-expressing pigs enable efficient in vivo genome editing
    • Kepin Wang,
    • Qin Jin,
    • Degong Ruan,
    • Yi Yang,
    • Qishuai Liu,
    • Han Wu,
    • Zhiwei Zhou,
    • Zhen Ouyang,
    • Zhaoming Liu,
    • Yu Zhao,
    • Bentian Zhao,
    • Quanjun Zhang,
    • Jiangyun Peng,
    • Chengdan Lai,
    • Nana Fan,
    • Yanhui Liang,
    • Ting Lan,
    • Nan Li,
    • Xiaoshan Wang,
    • Xinlu Wang,
    • Yong Fan,
    • Pieter A. Doevendans,
    • Joost P.G. Sluijter,
    • Pentao Liu,
    • Xiaoping Li,
    • and Liangxue Lai
    Genome Res. December 2017 27: 2061-2071; Published in Advance November 16, 2017, doi:10.1101/gr.222521.117
  8. Method: Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq
    • Peng Liu,
    • Rajendran Sanalkumar,
    • Emery H. Bresnick,
    • Sündüz Keleş,
    • and Colin N. Dewey
    Genome Res. August 2016 26: 1124-1133; Published in Advance July 12, 2016, doi:10.1101/gr.199174.115
    OPEN ACCESS ARTICLE
  9. METHODS: A Highly Efficient Recombineering-Based Method for Generating Conditional Knockout Mutations
    • Pentao Liu,
    • Nancy A. Jenkins,
    • and Neal G. Copeland
    Genome Res. March 1, 2003 13: 476-484; doi:10.1101/gr.749203
  10. LETTER: Construction of an ∼700-kb Transcript Map Around the Familial Mediterranean Fever Locus on Human Chromosome 16p13.3
    • Michael Centola,
    • Xiaoguang Chen,
    • Raman Sood,
    • Zuoming Deng,
    • Ivona Aksentijevich,
    • Trevor Blake,
    • Darrell O. Ricke,
    • Xiang Chen,
    • Geryl Wood,
    • Nurit Zaks,
    • Neil Richards,
    • David Krizman,
    • Elizabeth Mansfield,
    • Sinoula Apostolou,
    • Jingmei Liu,
    • Neta Shafran,
    • Anil Vedula,
    • Melanie Hamon,
    • Andrea Cercek,
    • Tanaz Kahan,
    • Deborah Gumucio,
    • David F. Callen,
    • Robert I. Richards,
    • Robert K. Moyzis,
    • Norman A. Doggett,
    • Francis S. Collins,
    • P. Paul Liu,
    • Nathan Fischel-Ghodsian,
    • and Daniel L. Kastner
    Genome Res. November 1, 1998 8: 1172-1191; doi:10.1101/gr.8.11.1172
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