Searching journal content for Nicholas M. Luscombe in author.

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  1. Research: Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species
    • Charles Plessy,
    • Michael J. Mansfield,
    • Aleksandra Bliznina,
    • Aki Masunaga,
    • Charlotte West,
    • Yongkai Tan,
    • Andrew W. Liu,
    • Jan Grašič,
    • María Sara del Río Pisula,
    • Gaspar Sánchez-Serna,
    • Marc Fabrega-Torrus,
    • Alfonso Ferrández-Roldán,
    • Vittoria Roncalli,
    • Pavla Navratilova,
    • Eric M. Thompson,
    • Takeshi Onuma,
    • Hiroki Nishida,
    • Cristian Cañestro,
    • and Nicholas M. Luscombe
    Genome Res. March 2024 34: 426-440; Published in Advance April 15, 2024, doi:10.1101/gr.278295.123
    OPEN ACCESS ARTICLE
  2. Research: Meta-analysis of human and mouse ALS astrocytes reveals multi-omic signatures of inflammatory reactive states
    • Oliver J. Ziff,
    • Benjamin E. Clarke,
    • Doaa M. Taha,
    • Hamish Crerar,
    • Nicholas M. Luscombe,
    • and Rickie Patani
    Genome Res. January 2022 32: 71-84; Published in Advance December 28, 2021, doi:10.1101/gr.275939.121
    OPEN ACCESS ARTICLE
  3. Method: Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2AZ-containing nucleosomes
    • Aylin Cakiroglu,
    • Cedric R. Clapier,
    • Andreas H. Ehrensberger,
    • Elodie Darbo,
    • Bradley R. Cairns,
    • Nicholas M. Luscombe,
    • and Jesper Q. Svejstrup
    Genome Res. June 2019 29: 988-998; Published in Advance May 16, 2019, doi:10.1101/gr.243139.118
    OPEN ACCESS ARTICLE
  4. Research: Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome
    • Cai Li,
    • Boris Lenhard,
    • and Nicholas M. Luscombe
    Genome Res. May 2018 28: 676-688; Published in Advance April 4, 2018, doi:10.1101/gr.231449.117
    OPEN ACCESS ARTICLE
  5. Resource: The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
    • Stefan Schoenfelder,
    • Mayra Furlan-Magaril,
    • Borbala Mifsud,
    • Filipe Tavares-Cadete,
    • Robert Sugar,
    • Biola-Maria Javierre,
    • Takashi Nagano,
    • Yulia Katsman,
    • Moorthy Sakthidevi,
    • Steven W. Wingett,
    • Emilia Dimitrova,
    • Andrew Dimond,
    • Lucas B. Edelman,
    • Sarah Elderkin,
    • Kristina Tabbada,
    • Elodie Darbo,
    • Simon Andrews,
    • Bram Herman,
    • Andy Higgs,
    • Emily LeProust,
    • Cameron S. Osborne,
    • Jennifer A. Mitchell,
    • Nicholas M. Luscombe,
    • and Peter Fraser
    Genome Res. April 2015 25: 582-597; Published in Advance March 9, 2015, doi:10.1101/gr.185272.114
    OPEN ACCESS ARTICLE
  6. Research: Small RNA profiling of Xenopus embryos reveals novel miRNAs and a new class of small RNAs derived from intronic transposable elements
    • Joanne L. Harding,
    • Stuart Horswell,
    • Claire Heliot,
    • Javier Armisen,
    • Lyle B. Zimmerman,
    • Nicholas M. Luscombe,
    • Eric A. Miska,
    • and Caroline S. Hill
    Genome Res. January 2014 24: 96-106; Published in Advance September 24, 2013, doi:10.1101/gr.144469.112
    OPEN ACCESS ARTICLE
  7. Research: A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast
    • Judith B. Zaugg and
    • Nicholas M. Luscombe
    Genome Res. January 2012 22: 84-94; Published in Advance September 19, 2011, doi:10.1101/gr.124099.111
    OPEN ACCESS ARTICLE
  8. Method: Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
    • Arttu Jolma,
    • Teemu Kivioja,
    • Jarkko Toivonen,
    • Lu Cheng,
    • Gonghong Wei,
    • Martin Enge,
    • Mikko Taipale,
    • Juan M. Vaquerizas,
    • Jian Yan,
    • Mikko J. Sillanpää,
    • Martin Bonke,
    • Kimmo Palin,
    • Shaheynoor Talukder,
    • Timothy R. Hughes,
    • Nicholas M. Luscombe,
    • Esko Ukkonen,
    • and Jussi Taipale
    Genome Res. June 2010 20: 861-873; Published in Advance April 8, 2010, doi:10.1101/gr.100552.109
    OPEN ACCESS ARTICLE
  9. LETTER: Principles of transcriptional regulation and evolution of the metabolic system in E. coli
    • Aswin S.N. Seshasayee,
    • Gillian M. Fraser,
    • M. Madan Babu,
    • and Nicholas M. Luscombe
    Genome Res. January 2009 19: 79-91; Published in Advance October 3, 2008, doi:10.1101/gr.079715.108
  10. Methods: Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
    • Haiyuan Yu,
    • Nicholas M. Luscombe,
    • Hao Xin Lu,
    • Xiaowei Zhu,
    • Yu Xia,
    • Jing-Dong J. Han,
    • Nicolas Bertin,
    • Sambath Chung,
    • Marc Vidal,
    • and Mark Gerstein
    Genome Res. June 2004 14: 1107-1118; doi:10.1101/gr.1774904
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