Searching journal content for Miten Jain in author.

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  1. Research: Assessing DNA methylation detection for primary human tissue using Nanopore sequencing
    • Rylee Genner,
    • Stuart Akeson,
    • Melissa Meredith,
    • Pilar Alvarez Jerez,
    • Laksh Malik,
    • Breeana Baker,
    • Abigail Miano-Burkhardt,
    • CARD-long-read Team,
    • Benedict Paten,
    • Kimberley J. Billingsley,
    • Cornelis Blauwendraat,
    • and Miten Jain
    Genome Res. April 2025 35: 632-643; Published in Advance March 7, 2025, doi:10.1101/gr.279159.124
    OPEN ACCESS ARTICLE
  2. Resource: High-coverage nanopore sequencing of samples from the 1000 Genomes Project to build a comprehensive catalog of human genetic variation
    • Jonas A. Gustafson,
    • Sophia B. Gibson,
    • Nikhita Damaraju,
    • Miranda P.G. Zalusky,
    • Kendra Hoekzema,
    • David Twesigomwe,
    • Lei Yang,
    • Anthony A. Snead,
    • Phillip A. Richmond,
    • Wouter De Coster,
    • Nathan D. Olson,
    • Andrea Guarracino,
    • Qiuhui Li,
    • Angela L. Miller,
    • Joy Goffena,
    • Zachary B. Anderson,
    • Sophie H.R. Storz,
    • Sydney A. Ward,
    • Maisha Sinha,
    • Claudia Gonzaga-Jauregui,
    • Wayne E. Clarke,
    • Anna O. Basile,
    • André Corvelo,
    • Catherine Reeves,
    • Adrienne Helland,
    • Rajeeva Lochan Musunuri,
    • Mahler Revsine,
    • Karynne E. Patterson,
    • Cate R. Paschal,
    • Christina Zakarian,
    • Sara Goodwin,
    • Tanner D. Jensen,
    • Esther Robb,
    • The 1000 Genomes ONT Sequencing Consortium,
    • University of Washington Center for Rare Disease Research (UW-CRDR),
    • Genomics Research to Elucidate the Genetics of Rare Diseases (GREGoR) Consortium,
    • William Richard McCombie,
    • Fritz J. Sedlazeck,
    • Justin M. Zook,
    • Stephen B. Montgomery,
    • Erik Garrison,
    • Mikhail Kolmogorov,
    • Michael C. Schatz,
    • Richard N. McLaughlin, Jr.,
    • Harriet Dashnow,
    • Michael C. Zody,
    • Matt Loose,
    • Miten Jain,
    • Evan E. Eichler,
    • and Danny E. Miller
    Genome Res. November 2024 34: 2061-2073; Published in Advance October 2, 2024, doi:10.1101/gr.279273.124
    OPEN ACCESS ARTICLE
  3. Method: Phased nanopore assembly with Shasta and modular graph phasing with GFAse
    • Ryan Lorig-Roach,
    • Melissa Meredith,
    • Jean Monlong,
    • Miten Jain,
    • Hugh E. Olsen,
    • Brandy McNulty,
    • David Porubsky,
    • Tessa G. Montague,
    • Julian K. Lucas,
    • Chris Condon,
    • Jordan M. Eizenga,
    • Sissel Juul,
    • Sean K. McKenzie,
    • Sara E. Simmonds,
    • Jimin Park,
    • Mobin Asri,
    • Sergey Koren,
    • Evan E. Eichler,
    • Richard Axel,
    • Bruce Martin,
    • Paolo Carnevali,
    • Karen H. Miga,
    • and Benedict Paten
    Genome Res. March 2024 34: 454-468; Published in Advance April 16, 2024, doi:10.1101/gr.278268.123
  4. Research: Gaps and complex structurally variant loci in phased genome assemblies
    • David Porubsky,
    • Mitchell R. Vollger,
    • William T. Harvey,
    • Allison N. Rozanski,
    • Peter Ebert,
    • Glenn Hickey,
    • Patrick Hasenfeld,
    • Ashley D. Sanders,
    • Catherine Stober,
    • Human Pangenome Reference Consortium,
    • Jan O. Korbel,
    • Benedict Paten,
    • Tobias Marschall,
    • and Evan E. Eichler
    Genome Res. April 2023 33: 496-510; Published in Advance May 10, 2023, doi:10.1101/gr.277334.122
    OPEN ACCESS ARTICLE
  5. Method: MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome
    • John R. Tyson,
    • Nigel J. O'Neil,
    • Miten Jain,
    • Hugh E. Olsen,
    • Philip Hieter,
    • and Terrance P. Snutch
    Genome Res. February 2018 28: 266-274; Published in Advance December 22, 2017, doi:10.1101/gr.221184.117
    OPEN ACCESS ARTICLE
  6. Method: Centromere reference models for human chromosomes X and Y satellite arrays
    • Karen H. Miga,
    • Yulia Newton,
    • Miten Jain,
    • Nicolas Altemose,
    • Huntington F. Willard,
    • and W. James Kent
    Genome Res. April 2014 24: 697-707; Published in Advance February 5, 2014, doi:10.1101/gr.159624.113
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