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Michael Snyder
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Displaying results 1-10 of
43
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Method
:
Modeling gene interactions in polygenic prediction via geometric deep learning
Han Li
,
Jianyang Zeng
,
Michael P. Snyder
,
and
Sai Zhang
Genome Res.
January 2025
35
:
178
-
187
;
Published in Advance
November 19, 2024
,
doi:
10.1101/gr.279694.124
Abstract
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Method
:
Simultaneous profiling of host expression and microbial abundance by spatial metatranscriptome sequencing
Lin Lyu
,
Xue Li
,
Ru Feng
,
Xin Zhou
,
Tuhin K. Guha
,
Xiaofei Yu
,
Guo Qiang Chen
,
Yufeng Yao
,
Bing Su
,
Duowu Zou
,
Michael P. Snyder
,
and
Lei Chen
Genome Res.
March 2023
33
:
401
-
411
;
Published in Advance
March 27, 2023
,
doi:
10.1101/gr.277178.122
Abstract
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Resource
:
Precision environmental health monitoring by longitudinal exposome and multi-omics profiling
Peng Gao
,
Xiaotao Shen
,
Xinyue Zhang
,
Chao Jiang
,
Sai Zhang
,
Xin Zhou
,
Sophia Miryam Schüssler-Fiorenza Rose
,
and
Michael Snyder
Genome Res.
June 2022
32
:
1199
-
1214
;
Published in Advance
June 6, 2022
,
doi:
10.1101/gr.276521.121
Abstract
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Research
:
Mutability of mononucleotide repeats, not oxidative stress, explains the discrepancy between laboratory-accumulated mutations and the natural allele-frequency spectrum in
C. elegans
Moein Rajaei
,
Ayush Shekhar Saxena
,
Lindsay M. Johnson
,
Michael C. Snyder
,
Timothy A. Crombie
,
Robyn E. Tanny
,
Erik C. Andersen
,
Joanna Joyner-Matos
,
and
Charles F. Baer
Genome Res.
September 2021
31
:
1602
-
1613
;
Published in Advance
August 17, 2021
,
doi:
10.1101/gr.275372.121
Abstract
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Research
:
Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment
Morteza Roodgar
,
Benjamin H. Good
,
Nandita R. Garud
,
Stephen Martis
,
Mohan Avula
,
Wenyu Zhou
,
Samuel M. Lancaster
,
Hayan Lee
,
Afshin Babveyh
,
Sophia Nesamoney
,
Katherine S. Pollard
,
and
Michael P. Snyder
Genome Res.
August 2021
31
:
1433
-
1446
;
Published in Advance
July 22, 2021
,
doi:
10.1101/gr.265058.120
Abstract
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Resource
:
A limited set of transcriptional programs define major cell types
Alessandra Breschi
,
Manuel Muñoz-Aguirre
,
Valentin Wucher
,
Carrie A. Davis
,
Diego Garrido-Martín
,
Sarah Djebali
,
Jesse Gillis
,
Dmitri D. Pervouchine
,
Anna Vlasova
,
Alexander Dobin
,
Chris Zaleski
,
Jorg Drenkow
,
Cassidy Danyko
,
Alexandra Scavelli
,
Ferran Reverter
,
Michael P. Snyder
,
Thomas R. Gingeras
,
and
Roderic Guigó
Genome Res.
July 2020
30
:
1047
-
1059
;
Published in Advance
July 29, 2020
,
doi:
10.1101/gr.263186.120
Abstract
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Method
:
Microfluidic isoform sequencing shows widespread splicing coordination in the human transcriptome
Hagen Tilgner
,
Fereshteh Jahanbani
,
Ishaan Gupta
,
Paul Collier
,
Eric Wei
,
Morten Rasmussen
,
and
Michael Snyder
Genome Res.
February 2018
28
:
231
-
242
;
Published in Advance
December 1, 2017
,
doi:
10.1101/gr.230516.117
Abstract
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Method
:
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
Ashis Saha
,
Yungil Kim
,
Ariel D.H. Gewirtz
,
Brian Jo
,
Chuan Gao
,
Ian C. McDowell
,
The GTEx Consortium
,
Barbara E. Engelhardt
,
and
Alexis Battle
Genome Res.
November 2017
27
:
1843
-
1858
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216721.116
Abstract
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Method
:
Identifying
cis
-mediators for
trans
-eQTLs across many human tissues using genomic mediation analysis
Fan Yang
,
Jiebiao Wang
,
The GTEx Consortium
,
Brandon L. Pierce
,
and
Lin S. Chen
Genome Res.
November 2017
27
:
1859
-
1871
;
Published in Advance
October 11, 2017
,
doi:
10.1101/gr.216754.116
Abstract
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Research
:
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans
Can Cenik
,
Elif Sarinay Cenik
,
Gun W. Byeon
,
Fabian Grubert
,
Sophie I. Candille
,
Damek Spacek
,
Bilal Alsallakh
,
Hagen Tilgner
,
Carlos L. Araya
,
Hua Tang
,
Emiliano Ricci
,
and
Michael P. Snyder
Genome Res.
November 2015
25
:
1610
-
1621
;
Published in Advance
August 21, 2015
,
doi:
10.1101/gr.193342.115
Abstract
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